Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
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Cluster 9
35
Diseases
395
Unique genes
0.128
Avg. similarity score
Wolff-parkinson-white syndrome
Most-connected disease (15 links)
Disease
Searched: Sick sinus syndrome 2, autosomal dominant
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Sick sinus syndrome 2, autosomal dominant
Wolff-parkinson-white syndrome
Catecholaminergic polymorphic ventricular tachycardia
Ventricular fibrillation
Left ventricular noncompaction cardiomyopathy
Arrhythmogenic right ventricular cardiomyopathy
Conduction disorder of the heart
Left ventricular disease
Short qt syndrome
Brugada syndrome
Cardiac arrest
Long qt syndrome
Sick sinus syndrome
Cardiac conduction disease
Hereditary bundle branch system defect
Dilated cardiomyopathy 1BB
Dilated cardiomyopathy 1JJ
Restrictive cardiomyopathy
Atrial flutter
Cardiac arrhythmia
Dilated cardiomyopathy 1W
Hereditary atrial fibrillation
Atrioventricular block
Cardiomyopathy, dilated, 2e
Concentric hypertrophic cardiomyopathy
Dilated cardiomyopathy 1Y
Paroxysmal atrial fibrillation
Barth syndrome
Congenital short qt syndrome
Myopathy with myalgia, increased serum creatine kinase, and with or without episodic rhabdomyolysis 2
5-oxoprolinase deficiency
Congenital right-sided heart lesions
Dilated cardiomyopathy 1Z
Hypertrophy
Hypotonia, ataxia, developmental delay, and tooth enamel defect syndrome
Member diseases (most connected first ‐ the cluster's core)
Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| SCN5A | 16 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Atrial flutter, Brugada syndrome, Cardiac arrest and 12 more |
| TTN | 15 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Atrial flutter, Atrioventricular block, Brugada syndrome and 11 more |
| DSP | 13 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Brugada syndrome, Cardiac arrest, Cardiac arrhythmia and 9 more |
| MYH6 | 13 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Atrial flutter, Cardiac arrest, Cardiac arrhythmia and 9 more |
| TRPM4 | 12 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Atrioventricular block, Brugada syndrome, Cardiac arrest and 8 more |
| KCNH2 | 11 / 35 | Atrial flutter, Brugada syndrome, Cardiac arrest, Cardiac arrhythmia and 7 more |
| RYR2 | 11 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Brugada syndrome, Cardiac arrest, Cardiac arrhythmia and 7 more |
| CACNA1C | 10 / 35 | Brugada syndrome, Cardiac arrhythmia, Catecholaminergic polymorphic ventricular tachycardia, Concentric hypertrophic cardiomyopathy and 6 more |
| ANK2 | 9 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Brugada syndrome, Cardiac arrest, Cardiac arrhythmia and 5 more |
| HCN4 | 9 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Atrial flutter, Brugada syndrome, Cardiac arrest and 5 more |
| KCNJ2 | 9 / 35 | Brugada syndrome, Cardiac arrhythmia, Catecholaminergic polymorphic ventricular tachycardia, Congenital short qt syndrome and 5 more |
| KCNQ1 | 9 / 35 | Brugada syndrome, Cardiac arrhythmia, Conduction disorder of the heart, Congenital short qt syndrome and 5 more |
| LMNA | 9 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Atrioventricular block, Cardiac arrhythmia, Cardiac conduction disease and 5 more |
| MYBPC3 | 9 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Brugada syndrome, Catecholaminergic polymorphic ventricular tachycardia, Concentric hypertrophic cardiomyopathy and 5 more |
| PKP2 | 9 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Brugada syndrome, Cardiac arrhythmia, Catecholaminergic polymorphic ventricular tachycardia and 5 more |
| DSG2 | 8 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Cardiac arrest, Catecholaminergic polymorphic ventricular tachycardia, Conduction disorder of the heart and 4 more |
| MYH7 | 8 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Cardiac arrhythmia, Conduction disorder of the heart, Left ventricular disease and 4 more |
| SCN1B | 8 / 35 | Brugada syndrome, Cardiac arrhythmia, Cardiac conduction disease, Conduction disorder of the heart and 4 more |
| CACNA2D1 | 7 / 35 | Brugada syndrome, Cardiac arrest, Congenital short qt syndrome, Long qt syndrome and 3 more |
| CACNB2 | 7 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Brugada syndrome, Cardiac arrest, Cardiac conduction disease and 3 more |
| CASQ2 | 7 / 35 | Atrial flutter, Cardiac arrhythmia, Catecholaminergic polymorphic ventricular tachycardia, Conduction disorder of the heart and 3 more |
| JUP | 7 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Conduction disorder of the heart, Left ventricular disease, Left ventricular noncompaction cardiomyopathy and 3 more |
| SCN10A | 7 / 35 | Atrial flutter, Atrioventricular block, Brugada syndrome, Cardiac arrhythmia and 3 more |
| LAMA4 | 6 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Brugada syndrome, Catecholaminergic polymorphic ventricular tachycardia, Dilated cardiomyopathy 1JJ and 2 more |
| NKX2-5 | 6 / 35 | Atrial flutter, Atrioventricular block, Hereditary atrial fibrillation, Hereditary bundle branch system defect and 2 more |
| RBM20 | 6 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Conduction disorder of the heart, Left ventricular noncompaction cardiomyopathy, Long qt syndrome and 2 more |
| TBX5 | 6 / 35 | Atrial flutter, Atrioventricular block, Brugada syndrome, Cardiac arrhythmia and 2 more |
| ABCC9 | 5 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Brugada syndrome, Hereditary atrial fibrillation, Left ventricular disease and 1 more |
| ACTC1 | 5 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Left ventricular disease, Left ventricular noncompaction cardiomyopathy, Restrictive cardiomyopathy and 1 more |
| AKAP9 | 5 / 35 | Brugada syndrome, Cardiac arrest, Long qt syndrome, Ventricular fibrillation and 1 more |
| FLNC | 5 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Cardiac arrhythmia, Conduction disorder of the heart, Restrictive cardiomyopathy and 1 more |
| KCNJ8 | 5 / 35 | Brugada syndrome, Cardiac arrest, Cardiac arrhythmia, Long qt syndrome and 1 more |
| PITX2 | 5 / 35 | Atrial flutter, Cardiac arrhythmia, Hereditary atrial fibrillation, Sick sinus syndrome and 1 more |
| SLC4A3 | 5 / 35 | Cardiac arrest, Cardiac arrhythmia, Congenital short qt syndrome, Short qt syndrome and 1 more |
| SNTA1 | 5 / 35 | Brugada syndrome, Long qt syndrome, Sick sinus syndrome, Ventricular fibrillation and 1 more |
| SYNE2 | 5 / 35 | Atrial flutter, Cardiac arrhythmia, Left ventricular disease, Long qt syndrome and 1 more |
| TNNT2 | 5 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Left ventricular disease, Left ventricular noncompaction cardiomyopathy, Restrictive cardiomyopathy and 1 more |
| VCL | 5 / 35 | Dilated cardiomyopathy 1W, Long qt syndrome, Short qt syndrome, Ventricular fibrillation and 1 more |
| ACTN2 | 4 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Left ventricular noncompaction cardiomyopathy, Ventricular fibrillation, Wolff-parkinson-white syndrome |
| AGT | 4 / 35 | Cardiac arrhythmia, Hypertrophy, Left ventricular disease, Sick sinus syndrome |
| CEP85L | 4 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Atrial flutter, Cardiac arrest, Cardiac arrhythmia |
| DMD | 4 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Conduction disorder of the heart, Left ventricular noncompaction cardiomyopathy, Restrictive cardiomyopathy |
| DPP6 | 4 / 35 | Cardiac arrest, Long qt syndrome, Ventricular fibrillation, Wolff-parkinson-white syndrome |
| DTNA | 4 / 35 | Cardiac arrhythmia, Left ventricular disease, Left ventricular noncompaction cardiomyopathy, Myopathy with myalgia, increased serum creatine kinase, and with or without episodic rhabdomyolysis 2 |
| JPH2 | 4 / 35 | Cardiomyopathy, dilated, 2e, Left ventricular disease, Left ventricular noncompaction cardiomyopathy, Ventricular fibrillation |
| KCNE2 | 4 / 35 | Cardiac arrhythmia, Hereditary atrial fibrillation, Long qt syndrome, Ventricular fibrillation |
| KCNJ5 | 4 / 35 | Atrial flutter, Hereditary atrial fibrillation, Long qt syndrome, Sick sinus syndrome |
| LDB3 | 4 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Left ventricular disease, Left ventricular noncompaction cardiomyopathy, Long qt syndrome |
| NEXN | 4 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Left ventricular disease, Left ventricular noncompaction cardiomyopathy, Long qt syndrome |
| PRDM16 | 4 / 35 | Left ventricular disease, Left ventricular noncompaction cardiomyopathy, Restrictive cardiomyopathy, Wolff-parkinson-white syndrome |
| SCN3B | 4 / 35 | Brugada syndrome, Cardiac arrhythmia, Hereditary atrial fibrillation, Long qt syndrome |
| TNNI3 | 4 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Left ventricular noncompaction cardiomyopathy, Long qt syndrome, Restrictive cardiomyopathy |
| TPM1 | 4 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Dilated cardiomyopathy 1Y, Left ventricular disease, Left ventricular noncompaction cardiomyopathy |
| ACE | 3 / 35 | Cardiac arrhythmia, Hypertrophy, Left ventricular disease |
| ACTA1 | 3 / 35 | Hypertrophy, Left ventricular disease, Restrictive cardiomyopathy |
| BAG3 | 3 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Atrioventricular block, Long qt syndrome |
| CALM1 | 3 / 35 | Cardiac arrhythmia, Catecholaminergic polymorphic ventricular tachycardia, Long qt syndrome |
| CALM2 | 3 / 35 | Cardiac arrhythmia, Catecholaminergic polymorphic ventricular tachycardia, Long qt syndrome |
| CALM3 | 3 / 35 | Cardiac arrhythmia, Catecholaminergic polymorphic ventricular tachycardia, Long qt syndrome |
| COL5A1 | 3 / 35 | Brugada syndrome, Cardiac arrhythmia, Wolff-parkinson-white syndrome |
| CTNNA3 | 3 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Left ventricular noncompaction cardiomyopathy, Long qt syndrome |
| DES | 3 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Atrioventricular block, Restrictive cardiomyopathy |
| DSC2 | 3 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Left ventricular disease, Long qt syndrome |
| EDN1 | 3 / 35 | Cardiac arrhythmia, Hypertrophy, Left ventricular disease |
| GJA5 | 3 / 35 | Atrial flutter, Hereditary atrial fibrillation, Wolff-parkinson-white syndrome |
| GPD1L | 3 / 35 | Brugada syndrome, Long qt syndrome, Wolff-parkinson-white syndrome |
| KCNA5 | 3 / 35 | Atrioventricular block, Cardiac arrhythmia, Hereditary atrial fibrillation |
| KCNE1 | 3 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Hereditary atrial fibrillation, Long qt syndrome |
| KCNE3 | 3 / 35 | Brugada syndrome, Long qt syndrome, Ventricular fibrillation |
| MYL3 | 3 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Long qt syndrome, Restrictive cardiomyopathy |
| MYPN | 3 / 35 | Left ventricular disease, Left ventricular noncompaction cardiomyopathy, Restrictive cardiomyopathy |
| NEBL | 3 / 35 | Cardiac arrest, Cardiac arrhythmia, Wolff-parkinson-white syndrome |
| NPPA | 3 / 35 | Hereditary atrial fibrillation, Hypertrophy, Left ventricular disease |
| PLN | 3 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Cardiac arrest, Cardiac arrhythmia |
| PRKAG2 | 3 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Left ventricular disease, Wolff-parkinson-white syndrome |
| SCN4B | 3 / 35 | Catecholaminergic polymorphic ventricular tachycardia, Hereditary atrial fibrillation, Long qt syndrome |
| SIRT6 | 3 / 35 | Hypertrophy, Left ventricular disease, Long qt syndrome |
| SLMAP | 3 / 35 | Brugada syndrome, Cardiac arrest, Long qt syndrome |
| TAFAZZIN | 3 / 35 | Barth syndrome, Left ventricular disease, Left ventricular noncompaction cardiomyopathy |
| TBX20 | 3 / 35 | Brugada syndrome, Left ventricular disease, Wolff-parkinson-white syndrome |
| TGFB3 | 3 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Brugada syndrome, Long qt syndrome |
| TMEM43 | 3 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Left ventricular noncompaction cardiomyopathy, Long qt syndrome |
| TRDN | 3 / 35 | Cardiac arrhythmia, Catecholaminergic polymorphic ventricular tachycardia, Long qt syndrome |
| ZFHX3 | 3 / 35 | Atrial flutter, Cardiac arrhythmia, Sick sinus syndrome |
| ADRB3 | 2 / 35 | Hypertrophy, Left ventricular disease |
| AGTR2 | 2 / 35 | Hypertrophy, Left ventricular disease |
| AHR | 2 / 35 | Hypertrophy, Left ventricular disease |
| AKAP6 | 2 / 35 | Atrial flutter, Cardiac arrhythmia |
| ANKRD1 | 2 / 35 | Brugada syndrome, Left ventricular disease |
| AOPEP | 2 / 35 | Atrial flutter, Cardiac arrhythmia |
| ASAH1 | 2 / 35 | Atrial flutter, Cardiac arrhythmia |
| C2ORF49 | 2 / 35 | Arrhythmogenic right ventricular cardiomyopathy, Left ventricular noncompaction cardiomyopathy |
| CACNA1C-IT2 | 2 / 35 | Brugada syndrome, Long qt syndrome |
| CACNA1D | 2 / 35 | Long qt syndrome, Sick sinus syndrome |
| CAND2 | 2 / 35 | Atrial flutter, Cardiac arrhythmia |
| CAV1 | 2 / 35 | Atrial flutter, Cardiac arrhythmia |
| CAV3 | 2 / 35 | Brugada syndrome, Long qt syndrome |
| CCDC141 | 2 / 35 | Atrioventricular block, Sick sinus syndrome |
| CDKN1A | 2 / 35 | Atrial flutter, Hypertrophy |
| CEP68 | 2 / 35 | Atrial flutter, Cardiac arrhythmia |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| Cytoskeleton in muscle cells | KEGG | 51 / 232 | 6.7× | 3.58e-28 | 8.37e-25 ✓ sig. |
| Adrenergic signaling in cardiomyocytes | KEGG | 37 / 154 | 7.3× | 4.42e-22 | 4.32e-19 ✓ sig. |
| Hypertrophic cardiomyopathy | KEGG | 29 / 99 | 8.9× | 3.84e-20 | 2.69e-17 ✓ sig. |
| Dilated cardiomyopathy | KEGG | 27 / 105 | 7.8× | 3.17e-17 | 1.38e-14 ✓ sig. |
| Oxytocin signaling pathway | KEGG | 30 / 154 | 5.9× | 2.04e-15 | 6.32e-13 ✓ sig. |
| Striated Muscle Contraction | Reactome | 16 / 36 | 13.5× | 5.56e-15 | 1.57e-12 ✓ sig. |
| Phase 0 - rapid depolarisation | Reactome | 17 / 44 | 11.7× | 1.33e-14 | 3.51e-12 ✓ sig. |
| Arrhythmogenic right ventricular cardiomyopathy | KEGG | 22 / 86 | 7.8× | 3.27e-14 | 8.20e-12 ✓ sig. |
| Cardiac muscle contraction | KEGG | 21 / 87 | 7.3× | 4.40e-13 | 8.50e-11 ✓ sig. |
| cGMP-PKG signaling pathway | KEGG | 28 / 166 | 5.1× | 7.79e-13 | 1.42e-10 ✓ sig. |
| Proteoglycans in cancer | KEGG | 30 / 204 | 4.5× | 4.54e-12 | 6.86e-10 ✓ sig. |
| Renin secretion | KEGG | 17 / 69 | 7.5× | 5.45e-11 | 6.44e-9 ✓ sig. |
| Phase 2 - plateau phase | Reactome | 11 / 25 | 13.4× | 1.25e-10 | 1.34e-8 ✓ sig. |
| Glioma | KEGG | 17 / 76 | 6.8× | 2.83e-10 | 2.81e-8 ✓ sig. |
| Cellular senescence | KEGG | 24 / 157 | 4.6× | 2.94e-10 | 2.90e-8 ✓ sig. |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| regulation of heart rate by cardiac conduction | GO:0086091 | 34 / 43 | 37.4× | 1.28e-49 | 2.77e-45 ✓ sig. |
| cardiac muscle contraction | GO:0060048 | 31 / 43 | 34.1× | 4.46e-43 | 5.79e-39 ✓ sig. |
| ventricular cardiac muscle cell action potential | GO:0086005 | 15 / 17 | 41.7× | 7.55e-24 | 2.03e-20 ✓ sig. |
| regulation of heart rate | GO:0002027 | 20 / 39 | 24.3× | 9.38e-24 | 2.45e-20 ✓ sig. |
| regulation of ventricular cardiac muscle cell membrane repolarization | GO:0060307 | 16 / 21 | 36.0× | 2.17e-23 | 5.49e-20 ✓ sig. |
| membrane repolarization during ventricular cardiac muscle cell action potential | GO:0098915 | 12 / 13 | 43.7× | 8.60e-20 | 1.36e-16 ✓ sig. |
| heart development | GO:0007507 | 37 / 273 | 6.4× | 1.71e-19 | 2.65e-16 ✓ sig. |
| sarcomere organization | GO:0045214 | 18 / 43 | 19.8× | 1.81e-19 | 2.78e-16 ✓ sig. |
| regulation of ventricular cardiac muscle cell action potential | GO:0098911 | 11 / 11 | 47.3× | 3.28e-19 | 4.84e-16 ✓ sig. |
| regulation of cardiac muscle contraction | GO:0055117 | 14 / 24 | 27.6× | 4.58e-18 | 5.58e-15 ✓ sig. |
| cardiac muscle cell action potential involved in contraction | GO:0086002 | 14 / 24 | 27.6× | 4.58e-18 | 5.58e-15 ✓ sig. |
| muscle contraction | GO:0006936 | 21 / 85 | 11.7× | 4.98e-17 | 5.16e-14 ✓ sig. |
| striated muscle contraction | GO:0006941 | 12 / 24 | 23.7× | 1.45e-14 | 9.83e-12 ✓ sig. |
| cardiac muscle cell development | GO:0055013 | 12 / 25 | 22.7× | 2.74e-14 | 1.75e-11 ✓ sig. |
| regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion | GO:0010881 | 12 / 25 | 22.7× | 2.74e-14 | 1.75e-11 ✓ sig. |