Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
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Cluster 3
45
Diseases
393
Unique genes
0.167
Avg. similarity score
Adrenocortical carcinoma
Most-connected disease (14 links)
Disease
Searched: Demyelinating diseases
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Demyelinating diseases
Adrenocortical carcinoma
Choroid plexus carcinoma
Choroid plexus papilloma
Bone osteosarcoma
B-lymphoblastic leukemia/lymphoma
Bone marrow failure syndromes
Li-fraumeni syndrome
Sezary syndrome
Vulvar lichen sclerosus
Endometrial hyperplasia
Hemangiosarcoma
Small cell carcinoma
Urogenital neoplasms
Urologic neoplasms
B-cell chronic lymphocytic leukemia
Breast implant-associated anaplastic large cell lymphoma
Carcinogenesis
Nasopharyngeal carcinoma
Sapho syndrome
B-cell acute lymphoblastic leukemia
CHEK2-related cancer predisposition
Central nervous system neoplasms
Chromosome 17 deletion
Congenital bone marrow failure syndrome
Osteogenic sarcoma
Osteosarcoma
Retinoblastoma
Aplasia and myelodysplasia
Growth hormone insensitivity syndrome with immune dysregulation
Lymphoblastic leukemia
Merkel cell carcinoma
Small cell lung carcinoma
Uterine neoplasms
immune dysregulation, autoimmunity, and autoinflammation
Autoinflammation, immune dysregulation, and eosinophilia
Cervicitis
Congenital progressive bone marrow failure-b-cell immunodeficiency-skeletal dysplasia syndrome
Familial telangiectasia cancer syndrome
Gestational trophoblastic disease
Nasopalpebral lipoma-coloboma syndrome
Uinary system neoplasms
granulocytopenia with immunoglobulin abnormality
leukemia, acute myeloid, susceptibility to
snijders blok-campeau syndrome
Member diseases (most connected first ‐ the cluster's core)
Top shared genes (genes linked to 2+ member diseases)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| TP53 | 23 / 45 | Adrenocortical carcinoma, B-cell chronic lymphocytic leukemia, B-lymphoblastic leukemia/lymphoma, Bone marrow failure syndromes and 19 more |
| CDKN2A | 9 / 45 | B-cell acute lymphoblastic leukemia, B-lymphoblastic leukemia/lymphoma, Carcinogenesis, Endometrial hyperplasia and 5 more |
| RB1 | 7 / 45 | Bone osteosarcoma, Osteogenic sarcoma, Osteosarcoma, Retinoblastoma and 3 more |
| CCND1 | 5 / 45 | B-cell chronic lymphocytic leukemia, Hemangiosarcoma, Nasopharyngeal carcinoma, Urologic neoplasms and 1 more |
| CHEK2 | 5 / 45 | Bone osteosarcoma, CHEK2-related cancer predisposition, Li-fraumeni syndrome, Osteogenic sarcoma and 1 more |
| KRAS | 5 / 45 | Carcinogenesis, Endometrial hyperplasia, Hemangiosarcoma, Nasopharyngeal carcinoma and 1 more |
| MYC | 5 / 45 | Demyelinating diseases, Hemangiosarcoma, Merkel cell carcinoma, Osteosarcoma and 1 more |
| FLT3 | 4 / 45 | B-cell acute lymphoblastic leukemia, B-lymphoblastic leukemia/lymphoma, leukemia, acute myeloid, susceptibility to, Lymphoblastic leukemia |
| PTEN | 4 / 45 | Endometrial hyperplasia, Nasopharyngeal carcinoma, Sezary syndrome, Small cell lung carcinoma |
| VEGFA | 4 / 45 | Hemangiosarcoma, Osteosarcoma, Urologic neoplasms, Uterine neoplasms |
| BAP1 | 3 / 45 | Central nervous system neoplasms, Nasopharyngeal carcinoma, Uterine neoplasms |
| CSF3 | 3 / 45 | Hemangiosarcoma, Small cell lung carcinoma, Uterine neoplasms |
| CTNNB1 | 3 / 45 | Endometrial hyperplasia, Hemangiosarcoma, Uterine neoplasms |
| EGFR | 3 / 45 | Osteosarcoma, Small cell lung carcinoma, Uterine neoplasms |
| ERCC6L2 | 3 / 45 | Bone marrow failure syndromes, Congenital bone marrow failure syndrome, Growth hormone insensitivity syndrome with immune dysregulation |
| GATA3 | 3 / 45 | B-cell acute lymphoblastic leukemia, B-lymphoblastic leukemia/lymphoma, Carcinogenesis |
| IKZF1 | 3 / 45 | B-cell acute lymphoblastic leukemia, B-lymphoblastic leukemia/lymphoma, Lymphoblastic leukemia |
| PIP4K2A | 3 / 45 | B-cell acute lymphoblastic leukemia, B-lymphoblastic leukemia/lymphoma, Lymphoblastic leukemia |
| PLCG1 | 3 / 45 | Hemangiosarcoma, immune dysregulation, autoimmunity, and autoinflammation, Sezary syndrome |
| SMARCA4 | 3 / 45 | Sezary syndrome, Small cell carcinoma, Small cell lung carcinoma |
| SRP72 | 3 / 45 | Aplasia and myelodysplasia, Bone marrow failure syndromes, Congenital bone marrow failure syndrome |
| ABL1 | 2 / 45 | B-lymphoblastic leukemia/lymphoma, Carcinogenesis |
| ARID1A | 2 / 45 | Nasopharyngeal carcinoma, Sezary syndrome |
| ARID5B | 2 / 45 | B-cell acute lymphoblastic leukemia, Lymphoblastic leukemia |
| ATR | 2 / 45 | Familial telangiectasia cancer syndrome, Urologic neoplasms |
| BCR | 2 / 45 | B-lymphoblastic leukemia/lymphoma, Lymphoblastic leukemia |
| BIRC5 | 2 / 45 | Small cell carcinoma, Uterine neoplasms |
| BRAF | 2 / 45 | Carcinogenesis, Sezary syndrome |
| BRCA2 | 2 / 45 | Breast implant-associated anaplastic large cell lymphoma, Small cell lung carcinoma |
| CDKN1B | 2 / 45 | Sezary syndrome, Uterine neoplasms |
| CEBPE | 2 / 45 | B-cell acute lymphoblastic leukemia, Lymphoblastic leukemia |
| CHD3 | 2 / 45 | Sezary syndrome, snijders blok-campeau syndrome |
| CREBBP | 2 / 45 | Sezary syndrome, Small cell lung carcinoma |
| CSF2 | 2 / 45 | B-cell acute lymphoblastic leukemia, Bone marrow failure syndromes |
| DNAJC21 | 2 / 45 | Bone marrow failure syndromes, Congenital bone marrow failure syndrome |
| ERBB2 | 2 / 45 | Carcinogenesis, Nasopharyngeal carcinoma |
| ERCC1 | 2 / 45 | Nasopharyngeal carcinoma, Uterine neoplasms |
| GSDMB | 2 / 45 | B-cell acute lymphoblastic leukemia, Lymphoblastic leukemia |
| HYOU1 | 2 / 45 | B-cell acute lymphoblastic leukemia, granulocytopenia with immunoglobulin abnormality |
| IKZF3 | 2 / 45 | B-cell acute lymphoblastic leukemia, B-cell chronic lymphocytic leukemia |
| IL32 | 2 / 45 | Cervicitis, Sezary syndrome |
| JAK1 | 2 / 45 | Autoinflammation, immune dysregulation, and eosinophilia, Breast implant-associated anaplastic large cell lymphoma |
| JAK2 | 2 / 45 | Breast implant-associated anaplastic large cell lymphoma, Uterine neoplasms |
| JUN | 2 / 45 | Hemangiosarcoma, Osteosarcoma |
| KMT2A | 2 / 45 | B-lymphoblastic leukemia/lymphoma, Small cell lung carcinoma |
| LHPP | 2 / 45 | B-cell acute lymphoblastic leukemia, Lymphoblastic leukemia |
| MDM2 | 2 / 45 | Li-fraumeni syndrome, Sapho syndrome |
| MET | 2 / 45 | Carcinogenesis, Osteosarcoma |
| MMP2 | 2 / 45 | Nasopharyngeal carcinoma, Osteosarcoma |
| MST1R | 2 / 45 | Nasopharyngeal carcinoma, Osteosarcoma |
| MTOR | 2 / 45 | Small cell carcinoma, Uterine neoplasms |
| MYSM1 | 2 / 45 | Bone marrow failure syndromes, Congenital progressive bone marrow failure-b-cell immunodeficiency-skeletal dysplasia syndrome |
| PAX5 | 2 / 45 | B-lymphoblastic leukemia/lymphoma, Lymphoblastic leukemia |
| POU5F1 | 2 / 45 | Carcinogenesis, Gestational trophoblastic disease |
| SIRT1 | 2 / 45 | Demyelinating diseases, Osteosarcoma |
| SLC2A13 | 2 / 45 | Uinary system neoplasms, Urogenital neoplasms |
| SOX2 | 2 / 45 | Osteosarcoma, Small cell lung carcinoma |
| STAT3 | 2 / 45 | Breast implant-associated anaplastic large cell lymphoma, Uterine neoplasms |
| SULT1A1 | 2 / 45 | B-cell acute lymphoblastic leukemia, Urologic neoplasms |
| TMEM132D | 2 / 45 | B-cell acute lymphoblastic leukemia, Small cell lung carcinoma |
| TP63 | 2 / 45 | Lymphoblastic leukemia, Nasopharyngeal carcinoma |
| WDR11 | 2 / 45 | Uinary system neoplasms, Urogenital neoplasms |
| ZDBF2 | 2 / 45 | Nasopalpebral lipoma-coloboma syndrome, Small cell lung carcinoma |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| Pathways in cancer | KEGG | 70 / 533 | 4.0× | 3.04e-24 | 4.77e-21 ✓ sig. |
| Prostate cancer | KEGG | 27 / 98 | 8.4× | 3.99e-18 | 2.29e-15 ✓ sig. |
| Breast cancer | KEGG | 31 / 148 | 6.4× | 6.75e-17 | 3.04e-14 ✓ sig. |
| Chronic myeloid leukemia | KEGG | 23 / 77 | 9.1× | 1.77e-16 | 7.44e-14 ✓ sig. |
| Human T-cell leukemia virus 1 infection | KEGG | 37 / 224 | 5.0× | 2.33e-16 | 9.56e-14 ✓ sig. |
| EGFR tyrosine kinase inhibitor resistance | KEGG | 23 / 80 | 8.8× | 4.53e-16 | 1.78e-13 ✓ sig. |
| Central carbon metabolism in cancer | KEGG | 21 / 71 | 9.0× | 4.66e-15 | 1.54e-12 ✓ sig. |
| Non-small cell lung cancer | KEGG | 21 / 73 | 8.8× | 8.70e-15 | 2.69e-12 ✓ sig. |
| Pancreatic cancer | KEGG | 21 / 77 | 8.3× | 2.84e-14 | 8.10e-12 ✓ sig. |
| Hepatocellular carcinoma | KEGG | 30 / 170 | 5.4× | 2.89e-14 | 8.19e-12 ✓ sig. |
| Kaposi sarcoma-associated herpesvirus infection | KEGG | 32 / 196 | 5.0× | 3.78e-14 | 1.04e-11 ✓ sig. |
| Endocrine resistance | KEGG | 23 / 99 | 7.1× | 7.17e-14 | 1.85e-11 ✓ sig. |
| MicroRNAs in cancer | KEGG | 40 / 311 | 3.9× | 8.42e-14 | 2.16e-11 ✓ sig. |
| Melanoma | KEGG | 20 / 73 | 8.4× | 1.07e-13 | 2.71e-11 ✓ sig. |
| Glioma | KEGG | 20 / 76 | 8.0× | 2.49e-13 | 5.89e-11 ✓ sig. |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| positive regulation of transcription by RNA polymerase II | GO:0045944 | 92 / 1,208 | 3.6× | 4.17e-28 | 1.87e-24 ✓ sig. |
| cell population proliferation | GO:0008283 | 40 / 263 | 7.2× | 5.69e-23 | 1.40e-19 ✓ sig. |
| regulation of cell population proliferation | GO:0042127 | 33 / 201 | 7.8× | 3.48e-20 | 5.64e-17 ✓ sig. |
| positive regulation of gene expression | GO:0010628 | 50 / 504 | 4.7× | 4.74e-20 | 7.42e-17 ✓ sig. |
| positive regulation of cell population proliferation | GO:0008284 | 47 / 532 | 4.2× | 7.01e-17 | 6.78e-14 ✓ sig. |
| negative regulation of cell population proliferation | GO:0008285 | 42 / 444 | 4.5× | 3.15e-16 | 2.76e-13 ✓ sig. |
| negative regulation of DNA-templated transcription | GO:0045892 | 50 / 631 | 3.8× | 5.68e-16 | 4.77e-13 ✓ sig. |
| negative regulation of transcription by RNA polymerase II | GO:0000122 | 64 / 1,002 | 3.0× | 1.25e-15 | 9.76e-13 ✓ sig. |
| positive regulation of DNA-templated transcription | GO:0045893 | 55 / 778 | 3.4× | 2.39e-15 | 1.78e-12 ✓ sig. |
| negative regulation of apoptotic process | GO:0043066 | 43 / 524 | 3.9× | 2.19e-14 | 1.36e-11 ✓ sig. |
| regulation of cell cycle | GO:0051726 | 30 / 262 | 5.4× | 4.53e-14 | 2.67e-11 ✓ sig. |
| heart development | GO:0007507 | 30 / 273 | 5.2× | 1.36e-13 | 7.28e-11 ✓ sig. |
| regulation of gene expression | GO:0010468 | 36 / 402 | 4.3× | 2.46e-13 | 1.26e-10 ✓ sig. |
| neuron differentiation | GO:0030182 | 26 / 222 | 5.6× | 1.38e-12 | 6.26e-10 ✓ sig. |
| positive regulation of MAPK cascade | GO:0043410 | 26 / 224 | 5.5× | 1.71e-12 | 7.53e-10 ✓ sig. |