← Back to all clusters

Cluster 12

24 diseases · 46 shared-gene connections
24 Diseases
476 Unique genes
0.149 Avg. similarity score
Marfan syndrome Most-connected disease (10 links)
Log in to save this analysis

Save This Analysis

Disease Searched: Bone marrow failure and diabetes mellitus syndrome Pinned (dragged)
Node size = connections within this cluster · edge thickness = similarity strength · hover an edge for its details · click a node to select it and show its pairs below (double-click or Ctrl/⌘-click opens the disease page) · drag a node to pin it in place · scroll/pinch to zoom.

Member diseases (most connected first ‐ the cluster's core)

Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)

Gene ⇵ Member diseases ⇵ Linked diseases
FBN1 13 / 24 Aneurysm, Aortic aneurysm, Congenital aneurysm of ascending aorta, Congenital contractural arachnodactyly and 9 more
SMAD3 10 / 24 Aneurysm, Aortic aneurysm, Congenital aneurysm of ascending aorta, Congenital contractural arachnodactyly and 6 more
LOX 9 / 24 Aortic aneurysm, Congenital aneurysm of ascending aorta, Congenital contractural arachnodactyly, Connective tissue disease and 5 more
MYH11 9 / 24 Aortic aneurysm, Congenital aneurysm of ascending aorta, Connective tissue disease, Ehlers-danlos syndrome and 5 more
COL3A1 8 / 24 Aortic aneurysm, Congenital aneurysm of ascending aorta, Congenital contractural arachnodactyly, Connective tissue disease and 4 more
FBN2 8 / 24 Aortic aneurysm, Congenital contractural arachnodactyly, Connective tissue disease, Ehlers-danlos syndrome and 4 more
FLNA 8 / 24 Aortic aneurysm, Connective tissue disease, Ehlers-danlos syndrome, familial thoracic aortic aneurysm and aortic dissection and 4 more
TGFBR2 8 / 24 Aortic aneurysm, Congenital aneurysm of ascending aorta, Congenital contractural arachnodactyly, Connective tissue disease and 4 more
COL5A1 7 / 24 Connective tissue disease, Ehlers-danlos syndrome, Keratoconus, Loeys-dietz syndrome and 3 more
MYLK 7 / 24 Aortic aneurysm, Congenital aneurysm of ascending aorta, Connective tissue disease, familial thoracic aortic aneurysm and aortic dissection and 3 more
TGFB2 7 / 24 Aortic aneurysm, Congenital contractural arachnodactyly, Ehlers-danlos syndrome, familial thoracic aortic aneurysm and aortic dissection and 3 more
COL5A2 6 / 24 Connective tissue disease, Ehlers-danlos syndrome, Keratoconus, Loeys-dietz syndrome and 2 more
MFAP5 6 / 24 Aortic aneurysm, Congenital contractural arachnodactyly, Connective tissue disease, familial thoracic aortic aneurysm and aortic dissection and 2 more
TGFBR1 6 / 24 Aortic aneurysm, Congenital contractural arachnodactyly, Ehlers-danlos syndrome, Loeys-dietz syndrome and 2 more
ACTA2 5 / 24 Aneurysm, Aortic aneurysm, Connective tissue disease, Marfan syndrome and 1 more
COL1A1 5 / 24 Connective tissue disease, Ehlers-danlos syndrome, Keratoconus, Marfan syndrome and 1 more
NDE1 5 / 24 Aortic aneurysm, Congenital aneurysm of ascending aorta, Connective tissue disease, Myopia and 1 more
PLOD1 5 / 24 Congenital contractural arachnodactyly, Ehlers-danlos syndrome, Keratoconus, Mitral valve prolapse and 1 more
PRKG1 5 / 24 Aortic aneurysm, Connective tissue disease, familial thoracic aortic aneurysm and aortic dissection, Marfan syndrome and 1 more
SLC2A10 5 / 24 Aortic aneurysm, Congenital contractural arachnodactyly, Ehlers-danlos syndrome, Marfan syndrome and 1 more
SMAD2 5 / 24 Congenital contractural arachnodactyly, Loeys-dietz syndrome, loeys-dietz syndrome 6, Marfan syndrome and 1 more
TGFB3 5 / 24 Congenital contractural arachnodactyly, familial thoracic aortic aneurysm and aortic dissection, Loeys-dietz syndrome, Marfan syndrome and 1 more
BGN 4 / 24 Congenital contractural arachnodactyly, familial thoracic aortic aneurysm and aortic dissection, Marfan syndrome, Thoracic aortic aneurysm and aortic dissection
COL2A1 4 / 24 Congenital aneurysm of ascending aorta, Connective tissue disease, Marfan syndrome, Myopia
FOXE3 4 / 24 Aortic aneurysm, Congenital aneurysm of ascending aorta, familial thoracic aortic aneurysm and aortic dissection, Thoracic aortic aneurysm and aortic dissection
NOTCH1 4 / 24 Connective tissue disease, Ehlers-danlos syndrome, Marfan syndrome, Thoracic aortic aneurysm and aortic dissection
SLC39A13 4 / 24 Connective tissue disease, Ehlers-danlos syndrome, Mitral valve prolapse, Myopia
SRFBP1 4 / 24 Aortic aneurysm, Congenital aneurysm of ascending aorta, Connective tissue disease, Thoracic aortic aneurysm and aortic dissection
THSD4 4 / 24 Aortic aneurysm, Congenital contractural arachnodactyly, Marfan syndrome, Thoracic aortic aneurysm and aortic dissection
ZNF469 4 / 24 Connective tissue disease, Ehlers-danlos syndrome, Keratoconus, Myopia
AEBP1 3 / 24 Congenital contractural arachnodactyly, Ehlers-danlos syndrome, Myopia
CBS 3 / 24 Congenital contractural arachnodactyly, Connective tissue disease, Thoracic aortic aneurysm and aortic dissection
DAB2IP 3 / 24 Aneurysm, Aortic aneurysm, Keratoconus
EFEMP1 3 / 24 Congenital contractural arachnodactyly, Connective tissue disease, Myopia
EFEMP2 3 / 24 Aortic aneurysm, Congenital contractural arachnodactyly, Thoracic aortic aneurysm and aortic dissection
IPO8 3 / 24 Congenital contractural arachnodactyly, Loeys-dietz syndrome, Marfan syndrome
KCNH5 3 / 24 Aneurysm, Aortic aneurysm, neonatal/infantile epilepsy syndrome
LTBP3 3 / 24 Congenital contractural arachnodactyly, Marfan syndrome, Mitral valve prolapse
MAT2A 3 / 24 familial thoracic aortic aneurysm and aortic dissection, Marfan syndrome, Thoracic aortic aneurysm and aortic dissection
MMP2 3 / 24 Aortic aneurysm, Marfan syndrome, Myopia
NCKAP5 3 / 24 Aneurysm, Aortic aneurysm, Vitreous body disease
NPR3 3 / 24 Boudin-mortier syndrome, Congenital contractural arachnodactyly, Marfan syndrome
SKI 3 / 24 Aortic aneurysm, Congenital contractural arachnodactyly, Thoracic aortic aneurysm and aortic dissection
ABL1 2 / 24 Congenital contractural arachnodactyly, Connective tissue disease
ADAMTS8 2 / 24 Aneurysm, Aortic aneurysm
AGT 2 / 24 Aortic aneurysm, Mitral valve prolapse
APOE 2 / 24 Aneurysm, Aortic aneurysm
ARIH1 2 / 24 Aortic aneurysm, Marfan syndrome
BASP1 2 / 24 Connective tissue disease, Mixed connective tissue disease
CAST 2 / 24 Aneurysm, Aortic aneurysm
CDH4 2 / 24 Connective tissue disease, Mixed connective tissue disease
CDKN1A 2 / 24 Aneurysm, Aortic aneurysm
CDYL 2 / 24 Connective tissue disease, Mixed connective tissue disease
CELSR2 2 / 24 Aneurysm, Aortic aneurysm
COL11A1 2 / 24 Connective tissue disease, Myopia
COL12A1 2 / 24 Ehlers-danlos syndrome, Keratoconus
COL1A2 2 / 24 Connective tissue disease, Ehlers-danlos syndrome
COL9A1 2 / 24 Connective tissue disease, Myopia
CSMD1 2 / 24 Aneurysm, Aortic aneurysm
DOT1L 2 / 24 Aneurysm, Aortic aneurysm
DSE 2 / 24 Ehlers-danlos syndrome, ehlers-danlos syndrome, musculocontractural type 2
DUT 2 / 24 Bone marrow failure and diabetes mellitus syndrome, Myopia
ELN 2 / 24 Aortic aneurysm, Thoracic aortic aneurysm and aortic dissection
EML6 2 / 24 Keratoconus, Myopia
FKBP14 2 / 24 Congenital contractural arachnodactyly, Ehlers-danlos syndrome
FLII 2 / 24 cardiomyopathy, dilated, 2j, Myopia
GDF7 2 / 24 Aneurysm, Aortic aneurysm
GRIA4 2 / 24 Myopia, neurodevelopmental disorder with or without seizures and gait abnormalities
HCN4 2 / 24 Marfan syndrome, Thoracic aortic aneurysm and aortic dissection
HDAC4 2 / 24 Connective tissue disease, Mixed connective tissue disease
HEY2 2 / 24 Marfan syndrome, Thoracic aortic aneurysm and aortic dissection
HGF 2 / 24 Keratoconus, Myopia
HHEX 2 / 24 Connective tissue disease, Mixed connective tissue disease
HLA-B 2 / 24 Connective tissue disease, Mitral valve prolapse
JAG1 2 / 24 Marfan syndrome, Thoracic aortic aneurysm and aortic dissection
KCNMB2 2 / 24 Connective tissue disease, Mixed connective tissue disease
LPA 2 / 24 Aneurysm, Aortic aneurysm
LPAR3 2 / 24 Connective tissue disease, Mixed connective tissue disease
LRP1 2 / 24 Aneurysm, Aortic aneurysm
LRP11 2 / 24 Connective tissue disease, Mixed connective tissue disease
LRP1B 2 / 24 Keratoconus, Myopia
LRP6 2 / 24 Keratoconus, Myopia
LTBP2 2 / 24 Marfan syndrome, Mitral valve prolapse
MED12 2 / 24 Ehlers-danlos syndrome, Thoracic aortic aneurysm and aortic dissection
MMP13 2 / 24 Aneurysm, Aortic aneurysm
MMP9 2 / 24 Aortic aneurysm, Marfan syndrome
MRC2 2 / 24 Aneurysm, Aortic aneurysm
MYRIP 2 / 24 Connective tissue disease, Mixed connective tissue disease
NSDHL 2 / 24 Connective tissue disease, Mitral valve prolapse
PBLD 2 / 24 Connective tissue disease, Mixed connective tissue disease
PCLO 2 / 24 Connective tissue disease, Mixed connective tissue disease
PFKP 2 / 24 Connective tissue disease, Mixed connective tissue disease
PLCE1 2 / 24 Aneurysm, Aortic aneurysm
PMEPA1 2 / 24 Congenital contractural arachnodactyly, Marfan syndrome
PRDM5 2 / 24 Connective tissue disease, Ehlers-danlos syndrome
PSRC1 2 / 24 Aneurysm, Aortic aneurysm
PTGIS 2 / 24 Connective tissue disease, Mixed connective tissue disease
PTPRN2 2 / 24 Connective tissue disease, Mixed connective tissue disease
ROBO4 2 / 24 Aortic aneurysm, Thoracic aortic aneurysm and aortic dissection
SLC35D1 2 / 24 Connective tissue disease, schneckenbecken dysplasia
What do these columns mean?
Connections in cluster
How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
Significant partners
How many of those links are statistically significant (FDR q < 0.05).
Curated genes
Distinct curated genes linked to that disease in GeDiPNet.
Member diseases (Top shared genes)
How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
Overlap genes (x / y)
x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
Cluster gene count
Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
Fold enrichment
Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
P-value / FDR q-value
Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
Shared genes (Pairs within this cluster)
Number of curated genes the two diseases in that row have in common.
Similarity score (Pairs within this cluster)
Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.

Enriched Pathways (why this cluster is grouped, biologically)

Pathway ⇵ Source ⇵ Overlap genes ⇵ Fold enrichment ⇵ P-value ⇵ FDR q-value ⇵
Collagen biosynthesis and modifying enzymes Reactome 26 / 67 9.8× 1.08e-19 7.58e-17 ✓ sig.
Assembly of collagen fibrils and other multimeric structures Reactome 22 / 51 10.9× 4.79e-18 2.73e-15 ✓ sig.
Collagen chain trimerization Reactome 20 / 44 11.5× 4.50e-17 2.10e-14 ✓ sig.
Collagen degradation Reactome 21 / 52 10.2× 1.44e-16 6.14e-14 ✓ sig.
Non-integrin membrane-ECM interactions Reactome 14 / 24 14.7× 2.67e-14 7.64e-12 ✓ sig.
ECM proteoglycans Reactome 18 / 51 8.9× 3.52e-13 8.20e-11 ✓ sig.
NCAM1 interactions Reactome 12 / 21 14.4× 2.78e-12 5.56e-10 ✓ sig.
Integrin cell surface interactions Reactome 21 / 81 6.5× 3.51e-12 6.88e-10 ✓ sig.
Protein digestion and absorption KEGG 23 / 103 5.6× 9.47e-12 1.74e-9 ✓ sig.
Extracellular matrix organization Reactome 10 / 15 16.8× 2.19e-11 3.69e-9 ✓ sig.
MET activates PTK2 signaling Reactome 13 / 30 10.9× 3.27e-11 5.36e-9 ✓ sig.
AGE-RAGE signaling pathway in diabetic complications KEGG 22 / 101 5.5× 4.55e-11 7.17e-9 ✓ sig.
Signaling by PDGF Reactome 13 / 33 9.9× 1.40e-10 2.00e-8 ✓ sig.
Molecules associated with elastic fibres Reactome 13 / 38 8.6× 1.11e-9 1.28e-7 ✓ sig.
Focal adhesion KEGG 28 / 203 3.5× 7.66e-9 7.27e-7 ✓ sig.

Enriched GO Terms (Biological Process, a second line of biological evidence)

GO term ⇵ GO ID ⇵ Overlap genes ⇵ Fold enrichment ⇵ P-value ⇵ FDR q-value ⇵
skeletal system development GO:0001501 38 / 151 9.9× 3.30e-27 1.34e-23 ✓ sig.
collagen fibril organization GO:0030199 24 / 65 14.5× 4.74e-22 9.92e-19 ✓ sig.
heart development GO:0007507 34 / 273 4.9× 1.98e-14 1.24e-11 ✓ sig.
blood vessel remodeling GO:0001974 14 / 42 13.1× 1.10e-12 5.07e-10 ✓ sig.
cartilage development GO:0051216 18 / 89 7.9× 8.48e-12 3.18e-9 ✓ sig.
positive regulation of epithelial to mesenchymal transition GO:0010718 15 / 59 10.0× 1.41e-11 5.06e-9 ✓ sig.
elastic fiber assembly GO:0048251 8 / 11 28.6× 2.58e-11 8.72e-9 ✓ sig.
extracellular matrix organization GO:0030198 21 / 145 5.7× 1.23e-10 3.52e-8 ✓ sig.
positive regulation of SMAD protein signal transduction GO:0060391 12 / 42 11.2× 3.59e-10 9.08e-8 ✓ sig.
lung development GO:0030324 17 / 108 6.2× 1.97e-9 4.11e-7 ✓ sig.
blood vessel development GO:0001568 14 / 70 7.9× 2.10e-9 4.34e-7 ✓ sig.
endochondral ossification GO:0001958 10 / 31 12.7× 2.87e-9 5.69e-7 ✓ sig.
regulation of cell population proliferation GO:0042127 22 / 201 4.3× 9.92e-9 1.69e-6 ✓ sig.
skin development GO:0043588 12 / 55 8.6× 1.06e-8 1.78e-6 ✓ sig.
bone mineralization GO:0030282 12 / 56 8.4× 1.31e-8 2.16e-6 ✓ sig.

Pairs within this cluster, by significance

Disease A ⇵ Disease B ⇵ Similarity score ⇵ Shared genes ⇵ P-value ⇵ FDR q-value ⇵
Marfan syndrome Thoracic aortic aneurysm and aortic dissection 0.491 28 4.65e-67 3.22e-65 ✓ sig.
Aneurysm Aortic aneurysm 0.364 24 5.64e-57 3.27e-55 ✓ sig.
Aortic aneurysm Thoracic aortic aneurysm and aortic dissection 0.284 23 1.48e-46 7.18e-45 ✓ sig.
Connective tissue disease Mixed connective tissue disease 0.183 22 7.99e-46 3.84e-44 ✓ sig.
Congenital contractural arachnodactyly Thoracic aortic aneurysm and aortic dissection 0.340 18 1.88e-41 8.15e-40 ✓ sig.
Congenital contractural arachnodactyly Marfan syndrome 0.327 18 5.65e-41 2.43e-39 ✓ sig.
Aortic aneurysm Marfan syndrome 0.233 20 3.65e-38 1.45e-36 ✓ sig.
Loeys-dietz syndrome Marfan syndrome 0.304 14 1.95e-35 7.14e-34 ✓ sig.
Ehlers-danlos syndrome Thoracic aortic aneurysm and aortic dissection 0.246 17 2.33e-34 8.23e-33 ✓ sig.
Connective tissue disease Thoracic aortic aneurysm and aortic dissection 0.144 20 1.76e-32 5.86e-31 ✓ sig.
familial thoracic aortic aneurysm and aortic dissection Thoracic aortic aneurysm and aortic dissection 0.286 12 2.14e-32 7.08e-31 ✓ sig.
Loeys-dietz syndrome Thoracic aortic aneurysm and aortic dissection 0.289 13 2.25e-32 7.42e-31 ✓ sig.
Ehlers-danlos syndrome Marfan syndrome 0.205 15 6.73e-29 1.98e-27 ✓ sig.
familial thoracic aortic aneurysm and aortic dissection Marfan syndrome 0.244 11 2.39e-28 6.89e-27 ✓ sig.
Connective tissue disease Marfan syndrome 0.118 17 1.00e-25 2.53e-24 ✓ sig.
Congenital aneurysm of ascending aorta Thoracic aortic aneurysm and aortic dissection 0.227 10 3.58e-25 8.82e-24 ✓ sig.
Congenital contractural arachnodactyly Loeys-dietz syndrome 0.278 10 7.74e-25 1.88e-23 ✓ sig.
Aortic aneurysm Congenital contractural arachnodactyly 0.165 13 1.23e-24 2.93e-23 ✓ sig.
Congenital contractural arachnodactyly Ehlers-danlos syndrome 0.194 12 2.87e-24 6.71e-23 ✓ sig.
Aortic aneurysm Congenital aneurysm of ascending aorta 0.154 10 3.43e-23 7.57e-22 ✓ sig.
Ehlers-danlos syndrome Loeys-dietz syndrome 0.196 10 9.54e-23 2.04e-21 ✓ sig.
Congenital aneurysm of ascending aorta Loeys-dietz syndrome 0.261 6 3.99e-16 6.14e-15 ✓ sig.
Congenital contractural arachnodactyly familial thoracic aortic aneurysm and aortic dissection 0.167 6 2.36e-14 3.20e-13 ✓ sig.
Congenital aneurysm of ascending aorta familial thoracic aortic aneurysm and aortic dissection 0.250 5 8.68e-14 1.13e-12 ✓ sig.
familial thoracic aortic aneurysm and aortic dissection Loeys-dietz syndrome 0.208 5 4.78e-13 5.94e-12 ✓ sig.
Ehlers-danlos syndrome Keratoconus 0.054 8 8.07e-10 7.36e-9 ✓ sig.
Connective tissue disease Myopia 0.046 11 5.24e-9 4.42e-8 ✓ sig.
Ehlers-danlos syndrome Myopia 0.041 7 8.99e-8 6.31e-7 ✓ sig.
Marfan syndrome Mitral valve prolapse 0.058 5 1.88e-7 1.25e-6 ✓ sig.
Ehlers-danlos syndrome Mitral valve prolapse 0.057 5 2.11e-7 1.40e-6 ✓ sig.
Keratoconus Thoracic aortic aneurysm and aortic dissection 0.041 6 4.48e-7 2.81e-6 ✓ sig.
Keratoconus Marfan syndrome 0.033 5 1.38e-5 6.66e-5 ✓ sig.
Loeys-dietz syndrome loeys-dietz syndrome 6 0.059 1 1.04e-3 1.74e-3 ✓ sig.
Cerebrocostomandibular syndrome Mixed connective tissue disease 0.040 1 1.56e-3 2.38e-3 ✓ sig.
Aneurysm neonatal/infantile epilepsy syndrome 0.036 1 1.75e-3 2.61e-3 ✓ sig.
Boudin-mortier syndrome Congenital contractural arachnodactyly 0.033 1 1.88e-3 2.76e-3 ✓ sig.
Congenital contractural arachnodactyly loeys-dietz syndrome 6 0.033 1 1.88e-3 2.76e-3 ✓ sig.
Boudin-mortier syndrome Marfan syndrome 0.023 1 2.79e-3 3.75e-3 ✓ sig.
Ehlers-danlos syndrome ehlers-danlos syndrome, musculocontractural type 2 0.022 1 2.86e-3 3.81e-3 ✓ sig.
Aneurysm Vitreous body disease 0.034 1 3.50e-3 4.52e-3 ✓ sig.
Aortic aneurysm neonatal/infantile epilepsy syndrome 0.016 1 4.03e-3 5.09e-3 ✓ sig.
Connective tissue disease schneckenbecken dysplasia 0.008 1 7.60e-3 8.90e-3 ✓ sig.
Aortic aneurysm Vitreous body disease 0.016 1 8.04e-3 9.34e-3 ✓ sig.
Bone marrow failure and diabetes mellitus syndrome Myopia 0.007 1 8.64e-3 9.97e-3 ✓ sig.
cardiomyopathy, dilated, 2j Myopia 0.007 1 8.64e-3 9.97e-3 ✓ sig.
Myopia neurodevelopmental disorder with or without seizures and gait abnormalities 0.007 1 8.64e-3 9.97e-3 ✓ sig.