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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Anorexia nervosa Cannabis abuse
23 genes
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2 of 23 corroborated by 2+ sources
ABT1(1), BANK1(1), CTNND1(1), EPHX2(1), FOXP1(1), PDE4B(1), PTPRF(1), SEMA3F(1), SEMA6D(1), SLC39A8(1), TCF20(1), TENM2(1) +11 more
0.067 0.198 8.17e-19 1.46e-17 ✓ sig. —
Intracellular cobalamin metabolism disorder Methylmalonic acidemia
7 genes
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7 of 7 corroborated by 2+ sources
ZNF143(3), MMACHC(3), MMADHC(6), ABCD4(7), HCFC1(5), LMBRD1(7), THAP11(5)
0.233 0.778 7.84e-19 1.40e-17 ✓ sig. Cluster 246 →
Biliary cirrhosis Systemic sclerosis
19 genes
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8 of 19 corroborated by 2+ sources
DDX6(1), DGKQ(1), ELMO1(1), HLA-DQA1(2), HLA-DRA(1), HLA-DQB1(2), ATG5(1), HLA-DPB1(1), CCR6(2), IL12RB2(1), IRF5(2), NFKB1(2) +7 more
0.080 0.148 7.77e-19 1.39e-17 ✓ sig. —
Nephrolithiasis Ureterolithiasis
9 genes
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1 of 9 corroborated by 2+ sources
ALPL(1), BCAS3(1), PDILT(1), ABCG2(1), RGS14(1), BCAS1(1), CYP24A1(2), KLK15(1), RSPH14(1)
0.074 0.900 7.77e-19 1.39e-17 ✓ sig. Cluster 178 →
Aplasia of the vermis Nephronophthisis
11 genes
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7 of 11 corroborated by 2+ sources
CPLANE1(1), CC2D2A(1), RPGRIP1L(2), NPHP3(6), TMEM67(4), NPHP1(6), CEP290(2), IFT172(2), TTC21B(5), AHI1(1), RLIG1(1)
0.131 0.275 7.13e-19 1.28e-17 ✓ sig. Cluster 8 →
C1 esterase inhibitor deficiency Complement component deficiency
6 genes
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6 of 6 corroborated by 2+ sources
C2(5), SERPING1(5), C4B(5), C8B(4), C9(4), C8A(4)
0.333 1.000 6.69e-19 1.20e-17 ✓ sig. Cluster 383 →
Hypotrichosis Woolly hair
6 genes
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5 of 6 corroborated by 2+ sources
KRT25(6), KRT71(6), KRT74(5), RB1(1), LIPH(5), LPAR6(6)
0.333 1.000 6.69e-19 1.20e-17 ✓ sig. —
Aortic dissection Congenital aneurysm of ascending aorta
7 genes
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2 of 7 corroborated by 2+ sources
FBN1(1), SMAD3(2), FOXE3(1), COL3A1(1), TGFBR2(2), LOX(1), SRFBP1(1)
0.292 0.583 6.18e-19 1.11e-17 ✓ sig. —
Breast cancer Gout
128 genes
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3 of 128 corroborated by 2+ sources
SIN3A(1), JMJD1C(1), RREB1(1), NOTCH2(1), PIK3R1(1), CHEK2(1), TPCN2(1), ADGRL2(1), BNC2(1), CADM2(1), CDKAL1(1), CNTNAP2(1) +116 more
0.073 0.156 5.99e-19 1.08e-17 ✓ sig. —
Major depressive disorder Parkinson disease
142 genes
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65 of 142 corroborated by 2+ sources
CYP17A1(1), KANSL1(1), RERE(1), WWOX(1), GFAP(2), ATP1A3(2), ADARB2(3), ALCAM(1), APOE(1), CACNA2D3(1), CAMK1D(1), CNTNAP2(3) +130 more
0.060 0.268 5.08e-19 9.17e-18 ✓ sig. Cluster 2 →
Congenital fiber type disproportion myopathy Congenital myopathy
8 genes
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8 of 8 corroborated by 2+ sources
ACTA1(7), RYR1(4), MYH7(5), TPM2(6), TPM3(6), ITGA7(3), SELENON(5), HACD1(6)
0.163 0.727 4.52e-19 8.15e-18 ✓ sig. Cluster 189 →
Digitotalar dysmorphism Distal arthrogryposis
6 genes
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6 of 6 corroborated by 2+ sources
MYH3(5), TPM2(6), NALCN(2), TNNI2(5), TNNT3(5), MYBPC1(5)
0.353 1.000 4.33e-19 7.82e-18 ✓ sig. Cluster 202 →
Ductus arteriosus, patent Patent ductus arteriosus
6 genes
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6 of 6 corroborated by 2+ sources
AGTR1(2), PRDM6(4), TFAP2B(5), NPPA(2), TRAF1(2), PTGIS(2)
0.353 1.000 4.33e-19 7.82e-18 ✓ sig. —
Combined pituitary hormone deficiency Pituitary hormone deficiency
6 genes
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6 of 6 corroborated by 2+ sources
HESX1(3), OTX2(5), LHX3(2), LHX4(5), POU1F1(6), PROP1(7)
0.462 0.667 3.81e-19 6.90e-18 ✓ sig. Cluster 218 →
Estrogen-receptor negative breast cancer Triple negative breast cancer
16 genes
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TERT(1), TP53(1), CCDC91(1), MDM4(1), CDCA7(1), PTHLH(1), FGFR2(1), TNFSF10(1), MLLT10(1), C11orf65(1), ABHD8(1), CCDC170(1) +4 more
0.051 0.471 3.75e-19 6.78e-18 ✓ sig. Cluster 20 →
Cholecystolithiasis Crigler-najjar syndrome
9 genes
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9 of 9 corroborated by 2+ sources
UGT1A10(2), UGT1A8(2), UGT1A9(2), UGT1A1(7), UGT1A6(2), UGT1A3(2), UGT1A4(2), UGT1A5(2), UGT1A7(2)
0.063 1.000 3.73e-19 6.77e-18 ✓ sig. —
Bone fragility with contractures, arterial rupture, and deafness Larsen syndrome
9 genes
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3 of 9 corroborated by 2+ sources
GORAB(1), XYLT1(1), P4HA1(1), CHST3(3), XYLT2(1), B3GALT6(1), B3GAT3(5), B4GALT7(1), PLOD3(3)
0.155 0.529 3.66e-19 6.65e-18 ✓ sig. Cluster 68 →
Larsen syndrome Osteoporosis-pseudoglioma syndrome
9 genes
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2 of 9 corroborated by 2+ sources
GORAB(1), XYLT1(1), P4HA1(1), CHST3(3), XYLT2(1), B3GALT6(1), B3GAT3(5), B4GALT7(1), PLOD3(1)
0.155 0.529 3.66e-19 6.65e-18 ✓ sig. Cluster 68 →
Omenn syndrome Severe combined immunodeficiency
8 genes
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7 of 8 corroborated by 2+ sources
LIG4(3), IL7R(4), ADA(7), RAG1(6), IL2RG(4), IFTAP(1), RAG2(6), DCLRE1C(7)
0.148 0.800 3.64e-19 6.62e-18 ✓ sig. —
Clonal hematopoiesis Myeloproliferative disorder
12 genes
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2 of 12 corroborated by 2+ sources
CHEK2(1), RUNX1(1), TERT(2), PARP1(1), HBS1L(1), JAK2(2), CYRIA(1), ATM(1), STN1(1), DLK1(1), TCL1A(1), TUNAR(1)
0.122 0.226 3.62e-19 6.58e-18 ✓ sig. Cluster 53 →
Periventricular heterotopia, x-linked Periventricular nodular heterotopia
6 genes
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6 of 6 corroborated by 2+ sources
ARFGEF2(3), FLNA(7), MAP1B(6), NEDD4L(6), ARF1(6), ERMARD(8)
0.429 0.857 3.50e-19 6.37e-18 ✓ sig. —
Microphthalmia Nanophthalmos
8 genes
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7 of 8 corroborated by 2+ sources
PRSS56(4), SOX2(4), SIX6(4), OTX2(4), RAX(4), ALDH1A3(4), MFRP(6), C1QTNF5(1)
0.186 0.667 3.07e-19 5.60e-18 ✓ sig. Cluster 56 →
Hereditary steroid-resistant nephrotic syndrome Steroid-resistant nephrotic syndrome
8 genes
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8 of 8 corroborated by 2+ sources
WT1(2), COL4A3(2), PAX2(2), APOL1(2), CRB2(2), NPHS2(2), AVIL(2), NPHS1(2)
0.200 0.615 2.96e-19 5.41e-18 ✓ sig. —
Blood coagulation disorder Thrombophilia
9 genes
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5 of 9 corroborated by 2+ sources
F2(6), MTHFR(3), ABO(1), SLC19A2(1), F5(6), PROC(6), ATP1B1(1), FGG(3), NME7(1)
0.188 0.375 2.69e-19 4.90e-18 ✓ sig. Cluster 55 →
Attention deficit hyperactivity disorder Central nervous system cancer
114 genes
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6 of 114 corroborated by 2+ sources
TEAD1(1), AKAP6(1), ANK3(1), ANO4(1), C6orf118(1), CACNA2D3(1), CDKAL1(1), CSMD1(1), CTNNA3(1), CUX1(1), DCC(1), DGKI(1) +102 more
0.069 0.174 2.65e-19 4.83e-18 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.