Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Esophageal squamous cell carcinoma Skin neoplasms
14 genes
Show details
2 of 14 corroborated by 2+ sources
NOTCH2(1), NOTCH1(1), TP53(2), HLA-DQA1(1), HLA-DRB1(1), GSTT1(1), NFE2L2(1), SOD2(1), PTGS2(1), HIF1A(1), KRT17(1), NOTCH3(1) +2 more
0.054 0.109 1.77e-11 1.90e-10 ✓ sig. —
Blood coagulation disorder Cor pulmonale
5 genes
Show details
2 of 5 corroborated by 2+ sources
F2(3), ABO(1), SLC19A2(1), F5(3), FGG(1)
0.143 0.333 1.75e-11 1.88e-10 ✓ sig. —
Cryptospermia Testicular azoospermia
4 genes
Show details
TRIM71(1), DMC1(1), M1AP(1), SYCP2(1)
0.118 1.000 1.75e-11 1.88e-10 ✓ sig. —
Congenital cystic kidney disease Meckel-gruber syndrome
4 genes
Show details
4 of 4 corroborated by 2+ sources
TMEM231(5), KIF14(2), B9D1(5), TXNDC15(5)
0.118 1.000 1.75e-11 1.88e-10 ✓ sig. Cluster 8 →
Autoimmune hepatitis Pleural diseases
5 genes
Show details
5 of 5 corroborated by 2+ sources
IL4(2), IL6(2), TGFB1(2), IFNG(2), CCL2(2)
0.114 0.500 1.74e-11 1.87e-10 ✓ sig. —
Atopic dermatitis Urticaria
8 genes
Show details
8 of 8 corroborated by 2+ sources
IL1B(2), TNF(2), GSTM1(2), TGFB1(2), IL18(2), HNMT(2), STAT6(3), SELE(2)
0.076 0.174 1.69e-11 1.82e-10 ✓ sig. Cluster 16 →
Thalassemia Unstable hemoglobin disease
3 genes
Show details
3 of 3 corroborated by 2+ sources
HBA1(3), HBA2(3), HBB(4)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 72 →
Congenital afibrinogenemia Dysfibrinogenemia
3 genes
Show details
3 of 3 corroborated by 2+ sources
FGA(5), FGG(5), FGB(4)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 149 →
Congenital fibrinogen deficiency Dysfibrinogenemia
3 genes
Show details
3 of 3 corroborated by 2+ sources
FGA(5), FGG(5), FGB(4)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 149 →
Congenital hypofibrinogenemia Dysfibrinogenemia
3 genes
Show details
3 of 3 corroborated by 2+ sources
FGA(3), FGG(3), FGB(3)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 149 →
Afibrinogenemia Dysfibrinogenemia
3 genes
Show details
3 of 3 corroborated by 2+ sources
FGA(4), FGG(4), FGB(4)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 149 →
Cerebral thrombosis Intracranial thrombosis
3 genes
Show details
3 of 3 corroborated by 2+ sources
PLAT(2), SERPINC1(2), VWF(2)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 266 →
Chilblain lupus Chilblain lupus erythematosus
3 genes
Show details
3 of 3 corroborated by 2+ sources
SAMHD1(7), TREX1(7), STING1(3)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 150 →
Dysfibrinogenemia Hypofibrinogenemia
3 genes
Show details
3 of 3 corroborated by 2+ sources
FGA(5), FGG(5), FGB(4)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 149 →
Mitochondrial hepatopathy Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis
3 genes
Show details
2 of 3 corroborated by 2+ sources
POLG(6), TWNK(5), POLGARF(1)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 97 →
Hemoglobin m disease Thalassemia
3 genes
Show details
3 of 3 corroborated by 2+ sources
HBA1(3), HBA2(2), HBB(4)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. Cluster 72 →
Hyperglycinuria Iminoglycinuria
3 genes
Show details
3 of 3 corroborated by 2+ sources
SLC36A2(6), SLC6A19(3), SLC6A20(4)
0.500 1.000 1.64e-11 1.77e-10 ✓ sig. —
Endometriosis Hypertension
67 genes
Show details
25 of 67 corroborated by 2+ sources
MAP3K1(1), SRD5A2(3), GATA4(1), PTEN(3), RUNX1(1), ASCC1(1), C6orf118(1), CAMK1D(1), CLIC4(1), COL12A1(1), DIO2(2), ESR2(2) +55 more
0.046 0.178 1.62e-11 1.75e-10 ✓ sig. Cluster 78 →
Hemophilia a Venous thrombosis
5 genes
Show details
5 of 5 corroborated by 2+ sources
F2(2), MTHFR(2), PLAT(2), F8(6), TFPI(2)
0.147 0.313 1.58e-11 1.71e-10 ✓ sig. Cluster 55 →
Cerebellar atrophy Congenital pes cavus
5 genes
Show details
DYNC1H1(1), HARS1(1), SMC1A(1), BIVM-ERCC5(1), ERCC5(1)
0.132 0.417 1.55e-11 1.68e-10 ✓ sig. —
Congenital malformation syndromes predominantly affecting facial appearance Orofaciodigital syndrome
4 genes
Show details
RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.121 1.000 1.54e-11 1.67e-10 ✓ sig. —
Orofaciodigital syndrome Warburg micro syndrome
4 genes
Show details
4 of 4 corroborated by 2+ sources
RAB18(6), RAB3GAP1(5), RAB3GAP2(5), TBC1D20(5)
0.121 1.000 1.54e-11 1.67e-10 ✓ sig. —
Hereditary breast cancer Muir-torre syndrome
4 genes
Show details
4 of 4 corroborated by 2+ sources
MSH2(5), MSH6(2), PMS2(2), MLH1(5)
0.121 1.000 1.54e-11 1.67e-10 ✓ sig. —
Hereditary breast cancer mismatch repair cancer syndrome 1
4 genes
Show details
MSH2(1), MSH6(1), PMS2(1), MLH1(1)
0.121 1.000 1.54e-11 1.67e-10 ✓ sig. —
Hemochromatosis Hereditary hemochromatosis
4 genes
Show details
4 of 4 corroborated by 2+ sources
TFR2(6), HFE(6), HAMP(6), SLC40A1(5)
0.222 0.571 1.49e-11 1.62e-10 ✓ sig. Cluster 135 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.