Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Curling ulcer Gastric ulcer
4 genes
Show details
2 of 4 corroborated by 2+ sources
PTGS2(1), ABO(2), NOS2(1), PSCA(2)
0.071 0.667 1.87e-9 1.64e-8 ✓ sig. —
Myeloproliferative disorder Thrombocythemia
4 genes
Show details
4 of 4 corroborated by 2+ sources
SH2B3(4), MPL(6), JAK2(6), CALR(4)
0.071 0.667 1.87e-9 1.64e-8 ✓ sig. Cluster 53 →
Myeloproliferative disorder Thrombocytosis
4 genes
Show details
4 of 4 corroborated by 2+ sources
SH2B3(3), MPL(4), JAK2(4), CALR(2)
0.071 0.667 1.87e-9 1.64e-8 ✓ sig. Cluster 53 →
Autoimmune musculoskeletal system disorder Diffuse cutaneous systemic sclerosis
4 genes
Show details
3 of 4 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), STAT4(2), TNPO3(1)
0.125 0.333 1.86e-9 1.64e-8 ✓ sig. —
Paroxysmal nocturnal hemoglobinuria Pemphigus
3 genes
Show details
3 of 3 corroborated by 2+ sources
HLA-DQA1(2), C3(2), HLA-DQB1(2)
0.250 0.500 1.84e-9 1.62e-8 ✓ sig. Cluster 1 →
46,xx ovotesticular disorder of sex development 46,xy partial gonadal dysgenesis
3 genes
Show details
1 of 3 corroborated by 2+ sources
NR5A1(2), SOX9(1), SRY(1)
0.250 0.500 1.84e-9 1.62e-8 ✓ sig. Cluster 38 →
Hemoglobinuria paroxysmal Pemphigus
3 genes
Show details
3 of 3 corroborated by 2+ sources
HLA-DQA1(2), C3(2), HLA-DQB1(2)
0.250 0.500 1.84e-9 1.62e-8 ✓ sig. Cluster 1 →
Cold paroxysmal hemoglobinuria Pemphigus
3 genes
Show details
3 of 3 corroborated by 2+ sources
HLA-DQA1(2), C3(2), HLA-DQB1(2)
0.250 0.500 1.84e-9 1.62e-8 ✓ sig. Cluster 1 →
Gonadal dysgenesis Swyer syndrome
4 genes
Show details
2 of 4 corroborated by 2+ sources
NR5A1(2), SRY(2), DHH(1), DHX37(1)
0.114 0.400 1.82e-9 1.61e-8 ✓ sig. Cluster 38 →
Congestive ophthalmopathy Dermatologic disorder
5 genes
Show details
SCD(1), IL10(1), TNF(1), PTGS2(1), IL1RN(1)
0.065 0.385 1.81e-9 1.60e-8 ✓ sig. —
Dermatologic disorder Myopathic ophthalmopathy
5 genes
Show details
SCD(1), IL10(1), TNF(1), PTGS2(1), IL1RN(1)
0.065 0.385 1.81e-9 1.60e-8 ✓ sig. —
Aplastic anemia Dyskeratosis congenita
5 genes
Show details
3 of 5 corroborated by 2+ sources
ACD(6), TERT(8), ZCCHC8(1), POT1(1), DKC1(7)
0.093 0.192 1.78e-9 1.58e-8 ✓ sig. Cluster 64 →
Chronic obstructive pulmonary disease Oral submucous fibrosis
5 genes
Show details
4 of 5 corroborated by 2+ sources
TNF(2), IL6(2), TGFB1(2), MMP9(2), CXCL8(1)
0.086 0.250 1.78e-9 1.57e-8 ✓ sig. —
Antiphospholipid syndrome Lupus nephritis
5 genes
Show details
1 of 5 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(1), CD40LG(1), HLA-DQB1(2), CRP(1)
0.086 0.250 1.78e-9 1.57e-8 ✓ sig. Cluster 1 →
Movement disorder Willis-ekbom disease
10 genes
Show details
4 of 10 corroborated by 2+ sources
BTBD9(3), CNTNAP5(1), MAP2K5(1), PTPRD(3), GSTM1(2), MYT1(1), MEIS1(3), CCDC148(1), STK33(1), LMO1(1)
0.042 0.175 1.77e-9 1.57e-8 ✓ sig. —
Gastrointestinal stromal tumor Polydactyly
6 genes
Show details
6 of 6 corroborated by 2+ sources
GLI3(4), CC2D2A(2), PTCH1(2), KIF3A(2), IFT88(2), GLI1(5)
0.074 0.154 1.76e-9 1.56e-8 ✓ sig. —
Ap-4 deficiency syndrome Hereditary spastic paraplegia
4 genes
Show details
4 of 4 corroborated by 2+ sources
AP4M1(3), AP4B1(3), AP4E1(3), AP4S1(3)
0.039 1.000 1.74e-9 1.55e-8 ✓ sig. —
Ap4-related intellectual disability and spastic paraplegia Hereditary spastic paraplegia
4 genes
Show details
4 of 4 corroborated by 2+ sources
AP4M1(2), AP4B1(2), AP4E1(2), AP4S1(2)
0.039 1.000 1.74e-9 1.55e-8 ✓ sig. —
Mitral valve prolapse Tetralogy of fallot
8 genes
Show details
8 of 8 corroborated by 2+ sources
FBN1(2), TBX5(2), TLL1(3), FLNA(2), GLIS1(2), DCHS1(5), LMCD1(3), DZIP1(4)
0.052 0.170 1.74e-9 1.55e-8 ✓ sig. —
Dyskinesia, drug-induced Movement disorder
5 genes
Show details
5 of 5 corroborated by 2+ sources
PDYN(2), DRD1(2), DRD2(2), DRD3(2), FOSB(2)
0.074 0.333 1.70e-9 1.51e-8 ✓ sig. Cluster 13 →
Lupus nephritis Uveomeningoencephalitic syndrome
4 genes
Show details
2 of 4 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(1), FAS(2), HLA-DQB1(2)
0.087 0.571 1.66e-9 1.48e-8 ✓ sig. Cluster 1 →
Congenital septal defect of heart Ventricular septal defect
4 genes
Show details
2 of 4 corroborated by 2+ sources
PCSK5(1), NKX2-5(3), CITED2(4), CRELD1(1)
0.087 0.571 1.66e-9 1.48e-8 ✓ sig. —
Huntington disease Mood disorder
12 genes
Show details
5 of 12 corroborated by 2+ sources
GRIK2(1), NRF1(2), BDNF(1), GLUL(1), MAOA(2), MAOB(2), NPY(1), PRNP(6), SIRT1(1), GRIN2A(1), HTT(8), NPY2R(1)
0.034 0.197 1.65e-9 1.47e-8 ✓ sig. —
Dominantly inherited sensory neuropathy Hereditary sensory and autonomic neuropathy
3 genes
Show details
3 of 3 corroborated by 2+ sources
DST(7), DNMT1(3), SCN11A(6)
0.150 1.000 1.59e-9 1.42e-8 ✓ sig. —
Pericarditis Pericardium disorder
3 genes
Show details
LRRC3B(1), NEK10(1), PTPRQ(1)
0.150 1.000 1.59e-9 1.42e-8 ✓ sig. Cluster 278 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.