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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Leukemia Lymphoid leukemia
5 genes
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GRAMD1B(1), IRF4(1), SP140(1), MYNN(1), ACTRT3(1)
0.075 0.179 1.25e-8 9.97e-8 ✓ sig. —
Hemolytic uremic syndrome Macular and posterior pole degeneration
4 genes
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4 of 4 corroborated by 2+ sources
CFI(6), C3(6), CD46(7), CFH(6)
0.093 0.308 1.23e-8 9.82e-8 ✓ sig. —
Arteriosclerosis Vasculitis
5 genes
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5 of 5 corroborated by 2+ sources
GATA2(2), SERPINA1(2), NOS3(2), NFKBIA(2), SENP1(2)
0.076 0.172 1.18e-8 9.39e-8 ✓ sig. —
inherited retinal dystrophy Stargardt disease
4 genes
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4 of 4 corroborated by 2+ sources
LRAT(2), CRB1(2), SPATA7(2), KCNV2(2)
0.100 0.267 1.18e-8 9.39e-8 ✓ sig. —
Complete unilateral cleft lip Lacrimoauriculodentodigital syndrome
3 genes
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3 of 3 corroborated by 2+ sources
FGFR3(5), FGF10(5), FGFR2(4)
0.081 1.000 1.17e-8 9.36e-8 ✓ sig. —
Mucositis Neutropenia
4 genes
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4 of 4 corroborated by 2+ sources
IL1B(2), MTHFR(2), CSF2(2), CSF3(2)
0.065 0.500 1.17e-8 9.32e-8 ✓ sig. —
Mainzer-saldino disease Short-rib thoracic dysplasia
3 genes
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3 of 3 corroborated by 2+ sources
IFT140(3), IFT172(4), WDR19(2)
0.120 0.750 1.16e-8 9.29e-8 ✓ sig. —
Diabetic polyneuropathy Osteomyelitis
3 genes
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1 of 3 corroborated by 2+ sources
TCF7L2(1), HLA-DQB1(2), FTO(1)
0.188 0.333 1.16e-8 9.25e-8 ✓ sig. —
Membranous glomerulonephritis Myasthenia gravis
5 genes
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4 of 5 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), CFB(2), HLA-B(2), C6orf15(1)
0.077 0.161 1.13e-8 9.02e-8 ✓ sig. Cluster 1 →
Edema Venous insufficiency
4 genes
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ABO(1), FTO(1), SLC19A2(1), F5(1)
0.073 0.444 1.13e-8 9.01e-8 ✓ sig. —
Fuchs endothelial dystrophy Keratoconus
6 genes
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1 of 6 corroborated by 2+ sources
COL8A2(3), RORA(1), PIDD1(1), RPLP2(1), HS3ST3B1(1), PNPLA2(1)
0.047 0.261 1.12e-8 8.94e-8 ✓ sig. —
Childhood absence epilepsy Dravet syndrome
3 genes
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3 of 3 corroborated by 2+ sources
GABRG2(2), GABRA1(2), SCN1B(3)
0.188 0.375 1.10e-8 8.82e-8 ✓ sig. Cluster 47 →
Diabetic ketoacidosis Latent autoimmune diabetes in adults
4 genes
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1 of 4 corroborated by 2+ sources
INS(3), HLA-DQA1(1), HLA-DQB1(1), INS-IGF2(1)
0.091 0.333 1.09e-8 8.74e-8 ✓ sig. —
Aplastic anemia Essential thrombocythemia
4 genes
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4 of 4 corroborated by 2+ sources
MPL(2), THPO(3), TGFB1(2), JAK2(4)
0.095 0.308 1.08e-8 8.68e-8 ✓ sig. —
X-linked complex neurodevelopmental disorder X-linked syndromic complex neurodevelopmental disorder
3 genes
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3 of 3 corroborated by 2+ sources
AP1S2(2), TFE3(2), ZFX(2)
0.083 1.000 1.08e-8 8.62e-8 ✓ sig. Cluster 115 →
Myelodysplastic syndrome Myeloproliferative disorder
6 genes
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6 of 6 corroborated by 2+ sources
RUNX1(2), TERT(2), TP53(2), JAK2(2), DNMT3A(2), DLK1(2)
0.064 0.130 1.05e-8 8.39e-8 ✓ sig. Cluster 53 →
Atrial septal defect Congenital heart defects
6 genes
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4 of 6 corroborated by 2+ sources
GATA4(6), FOXP1(1), TGFB2(2), MYH6(6), ISL1(1), GATA6(6)
0.060 0.171 1.04e-8 8.32e-8 ✓ sig. —
Nasopharyngeal carcinoma Penile neoplasms
3 genes
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1 of 3 corroborated by 2+ sources
TP53(3), KRAS(1), PIK3CA(1)
0.125 0.750 1.01e-8 8.11e-8 ✓ sig. —
Gastric ulcer Gastritis
5 genes
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1 of 5 corroborated by 2+ sources
KCNF1(1), ZNF385B(1), IL1B(2), SORCS2(1), CDH18(1)
0.070 0.227 1.00e-8 8.04e-8 ✓ sig. —
Cerebral hemorrhage Coronary restenosis
4 genes
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4 of 4 corroborated by 2+ sources
ACE(2), MMP3(2), SPP1(2), HMOX1(2)
0.100 0.286 1.00e-8 8.04e-8 ✓ sig. —
Craniosynostosis Tooth agenesis
6 genes
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5 of 6 corroborated by 2+ sources
BMP2(2), GLI3(1), MSX2(8), MSX1(5), FGFR1(3), AXIN2(2)
0.063 0.146 9.88e-9 7.93e-8 ✓ sig. Cluster 63 →
Beta thalassemia Polycythemia
4 genes
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4 of 4 corroborated by 2+ sources
HFE(2), EPO(3), GH1(2), HBB(8)
0.108 0.211 9.78e-9 7.85e-8 ✓ sig. —
Sepsis Trigeminal neuralgia
4 genes
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4 of 4 corroborated by 2+ sources
IL1B(2), TNF(2), MAPK1(2), MAPK3(2)
0.093 0.333 9.68e-9 7.78e-8 ✓ sig. —
Anhydramnios autosomal dominant polycystic kidney disease
3 genes
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3 of 3 corroborated by 2+ sources
DNAJB11(2), PKD1(2), PKD2(2)
0.188 0.429 9.48e-9 7.62e-8 ✓ sig. —
Collagen vi-related myopathy Steroid-resistant nephrotic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(2), COL4A3(2), COL4A4(2)
0.176 0.500 9.39e-9 7.55e-8 ✓ sig. Cluster 49 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.