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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bouillaud’s disease Obstructive asthma
2 genes
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2 of 2 corroborated by 2+ sources
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 1 →
Mesangiocapillary glomerulonephritis Thrombotic microangiopathy
2 genes
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2 of 2 corroborated by 2+ sources
CFI(2), CFH(2)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. —
Chromosome y microdeletion syndrome Male infertility y chromosome microdeletion
2 genes
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2 of 2 corroborated by 2+ sources
TSPY1(2), USP9Y(2)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. —
Cardiovascular abnormalities Urethral obstruction
3 genes
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3 of 3 corroborated by 2+ sources
AGT(2), NOS2(2), EDN1(2)
0.086 0.273 6.99e-7 4.23e-6 ✓ sig. —
Gastric ulcer Sleep apnea
5 genes
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NOS3(1), TNF(1), NRG1(1), ABO(1), MMP9(1)
0.051 0.102 6.77e-7 4.10e-6 ✓ sig. —
Nephrosclerosis Oral submucous fibrosis
3 genes
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3 of 3 corroborated by 2+ sources
TGFB1(2), COL1A1(2), FGF2(2)
0.094 0.214 6.76e-7 4.10e-6 ✓ sig. —
Nephrotic syndrome, steroid-resistant, autosomal recessive Steroid-resistant nephrotic syndrome
2 genes
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AXDND1(1), NPHS2(1)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. —
Optic neuritis Visual system disorder
2 genes
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EFEMP1(1), PNPT1(1)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. —
Cholesterol embolism Intracranial hemorrhage
2 genes
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2 of 2 corroborated by 2+ sources
PLAU(2), PLAT(2)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. Cluster 123 →
Intracranial embolism and thrombosis Intracranial hemorrhage
2 genes
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2 of 2 corroborated by 2+ sources
PLAU(2), PLAT(2)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. Cluster 123 →
Amegakaryocytic thrombocytopenia Essential thrombocythemia
2 genes
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2 of 2 corroborated by 2+ sources
MPL(3), THPO(3)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. Cluster 53 →
Deafness enamel hypoplasia nail defects Zellweger spectrum disorder
2 genes
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2 of 2 corroborated by 2+ sources
PEX6(3), PEX1(3)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. —
Deafness-enamel hypoplasia-nail defects syndrome Zellweger spectrum disorder
2 genes
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2 of 2 corroborated by 2+ sources
PEX6(2), PEX1(2)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. —
Branchiootic syndrome Congenital abnormalities
2 genes
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2 of 2 corroborated by 2+ sources
EYA1(6), SIX1(6)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. Cluster 145 →
Congenital amegakaryocytic thrombocytopenia Essential thrombocythemia
2 genes
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2 of 2 corroborated by 2+ sources
MPL(6), THPO(5)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. Cluster 53 →
Congenital cardiomyopathy Neuropathy, ataxia, and retinitis pigmentosa
2 genes
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ND5(1), ND4(1)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. Cluster 32 →
Deafness, sensorineural, autosomal-mitochondrial type Neuropathy, ataxia, and retinitis pigmentosa
2 genes
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1 of 2 corroborated by 2+ sources
ND1(1), COX1(2)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. —
Benign recurrent intrahepatic cholestasis Progressive intrahepatic cholestasis
2 genes
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2 of 2 corroborated by 2+ sources
ATP8B1(4), ABCB11(4)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. Cluster 319 →
Kidney neoplasms Sezary syndrome
4 genes
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BRAF(1), MAPK1(1), CDKN1B(1), IL32(1)
0.063 0.148 6.56e-7 3.99e-6 ✓ sig. —
Clonal hematopoiesis Myelodysplastic syndrome
5 genes
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3 of 5 corroborated by 2+ sources
GATA2(4), RUNX1(2), TERT(1), JAK2(1), DLK1(2)
0.051 0.109 6.49e-7 3.95e-6 ✓ sig. Cluster 53 →
Sickle cell anemia Spherocytosis
3 genes
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3 of 3 corroborated by 2+ sources
CAD(2), UMPS(2), DHODH(2)
0.083 0.300 6.41e-7 3.90e-6 ✓ sig. —
Fuchs endothelial dystrophy Hereditary corneal dystrophy
3 genes
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3 of 3 corroborated by 2+ sources
COL8A2(3), ZEB1(3), SLC4A11(3)
0.091 0.250 6.35e-7 3.87e-6 ✓ sig. Cluster 75 →
Aplasia of the vermis Dandy-walker syndrome
4 genes
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HYLS1(1), PIBF1(1), CSPP1(1), ARMC9(1)
0.056 0.200 6.28e-7 3.82e-6 ✓ sig. Cluster 8 →
Congenital fibrosis of extraocular muscles Cortical dysplasia with other brain malformations
3 genes
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3 of 3 corroborated by 2+ sources
TUBB(3), TUBB3(5), TUBB2B(5)
0.097 0.188 6.20e-7 3.78e-6 ✓ sig. Cluster 176 →
Brain neoplasms Diabetic angiopathies
4 genes
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4 of 4 corroborated by 2+ sources
VEGFA(2), PON1(2), SOD2(2), RELA(2)
0.063 0.143 6.19e-7 3.77e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.