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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Familial focal epilepsy with variable foci Focal epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
DEPDC5(5), NPRL2(6), NPRL3(5)
0.300 0.750 3.68e-10 3.48e-9 ✓ sig. —
Complex cortical dysplasia with other brain malformations Tubulinopathy
3 genes
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3 of 3 corroborated by 2+ sources
TUBB2A(3), TUBB3(3), TUBB2B(5)
0.300 0.750 3.68e-10 3.48e-9 ✓ sig. Cluster 176 →
Congenital foot deformity Congenital hand deformities
3 genes
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TP63(1), PTHLH(1), LMNA(1)
0.300 0.750 3.68e-10 3.48e-9 ✓ sig. Cluster 27 →
Kidney and ureter calculus Urolithiasis
4 genes
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4 of 4 corroborated by 2+ sources
CASR(2), RGS14(2), SLC34A1(2), CYP24A1(2)
0.057 1.000 3.69e-10 3.49e-9 ✓ sig. —
Primary microcephaly Seckel syndrome
5 genes
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5 of 5 corroborated by 2+ sources
CENPE(4), CDK5RAP2(4), CEP152(7), CEP63(5), CPAP(7)
0.102 0.278 3.78e-10 3.57e-9 ✓ sig. Cluster 101 →
Distal hereditary motor neuropathy Neuromuscular disease
6 genes
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5 of 6 corroborated by 2+ sources
SORD(4), TRPV4(5), LMNA(1), PLEKHG5(4), SPTAN1(3), VWA1(5)
0.085 0.167 3.82e-10 3.60e-9 ✓ sig. —
Male infertility single gene azoospermia Premature ovarian failure
11 genes
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10 of 11 corroborated by 2+ sources
WT1(1), BNC1(4), NR5A1(6), STAG3(6), XRCC2(5), C14orf39(5), MSH5(6), FANCM(4), DNAH6(2), MEIOB(4), SYCE1(6)
0.052 0.103 3.83e-10 3.61e-9 ✓ sig. Cluster 31 →
Interstitial lung disease Obstructive airway disease
9 genes
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6 of 9 corroborated by 2+ sources
RTEL1(1), TERT(4), DSP(2), HLA-DPB1(2), IL1RN(1), SFTPC(4), FAM13A(2), SFTPA1(5), TOLLIP(1)
0.057 0.136 3.88e-10 3.66e-9 ✓ sig. —
Diabetic angiopathies Liver failure
6 genes
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6 of 6 corroborated by 2+ sources
ASS1(2), VEGFA(2), TNF(2), ALB(2), IL1RN(2), FASLG(2)
0.080 0.214 3.92e-10 3.69e-9 ✓ sig. Cluster 368 →
Diabetic peripheral angiopathy Liver failure
6 genes
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6 of 6 corroborated by 2+ sources
ASS1(2), VEGFA(2), TNF(2), ALB(2), IL1RN(2), FASLG(2)
0.080 0.214 3.92e-10 3.69e-9 ✓ sig. Cluster 368 →
Hypogonadotropic hypogonadism Pituitary stalk interruption syndrome
6 genes
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5 of 6 corroborated by 2+ sources
PROKR2(7), CHD7(5), WDR11(5), NSMF(6), SOX11(1), KISS1R(6)
0.082 0.194 4.04e-10 3.80e-9 ✓ sig. Cluster 54 →
Pancreatic neoplasms Pancreatitis
9 genes
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9 of 9 corroborated by 2+ sources
PTGS2(2), PTHLH(2), ABO(2), PTCH1(2), CNR2(2), CNR1(2), PRSS1(4), SPINK1(4), SST(3)
0.054 0.158 4.10e-10 3.86e-9 ✓ sig. —
Delirium, dementia, and cognitive disorders Diabetes complications
5 genes
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5 of 5 corroborated by 2+ sources
ABCC4(2), SLC10A2(2), SLC51B(2), SLC51A(2), NR0B2(2)
0.078 0.417 4.12e-10 3.87e-9 ✓ sig. Cluster 351 →
Neural tube defect Neural tube defects, susceptibility to
4 genes
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4 of 4 corroborated by 2+ sources
VANGL2(5), TBXT(3), FUZ(4), VANGL1(4)
0.080 0.800 4.15e-10 3.90e-9 ✓ sig. —
Aplastic anemia Oral submucous fibrosis
5 genes
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3 of 5 corroborated by 2+ sources
GSTT1(1), TNF(2), GSTM1(1), TGFB1(2), IFNG(4)
0.104 0.250 4.24e-10 3.98e-9 ✓ sig. —
Cerebral hemorrhage Venous thrombosis
5 genes
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PLAU(1), PLAT(1), SERPINC1(1), KDR(1), F7(1)
0.106 0.227 4.24e-10 3.99e-9 ✓ sig. Cluster 55 →
Rosacea Sebaceous gland disease
4 genes
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HERC2(1), IRF4(1), MC1R(1), SLC45A2(1)
0.160 0.286 4.26e-10 4.00e-9 ✓ sig. —
Urinary bladder cancer Urinary bladder neoplasms
10 genes
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10 of 10 corroborated by 2+ sources
FGFR3(3), TERT(2), TACC3(2), KRAS(2), PSCA(2), NAT2(2), RB1(2), HRAS(2), CLPTM1L(2), CCNE1(2)
0.050 0.152 4.39e-10 4.12e-9 ✓ sig. —
Hyperthyroidism Multinodular goiter
6 genes
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NFIA(1), TG(1), FAM227B(1), PRDM11(1), FGF7(1), MICOS10(1)
0.079 0.214 4.41e-10 4.14e-9 ✓ sig. —
Dental enamel hypoplasia Tooth agenesis
5 genes
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MSX2(1), ROBO1(1), CHCHD5(1), SMAD2(1), PAPOLG(1)
0.094 0.313 4.44e-10 4.17e-9 ✓ sig. —
Amino acid metabolism disorder Urea cycle disorder
4 genes
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4 of 4 corroborated by 2+ sources
ASL(2), ARG1(3), NAGS(2), SLC25A15(2)
0.129 0.500 4.45e-10 4.17e-9 ✓ sig. —
Barrett esophagus Digestive system disease
9 genes
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2 of 9 corroborated by 2+ sources
ALDH1A2(1), BCL3(1), CRTC1(1), FOXP1(2), KHDRBS2(1), DPP6(1), GAST(2), BARX1(1), GOLIM4(1)
0.057 0.125 4.49e-10 4.20e-9 ✓ sig. —
Bronchopulmonary dysplasia Lung disease
8 genes
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3 of 8 corroborated by 2+ sources
GSTP1(1), GSTT1(1), IL1B(2), TNF(2), GSTM1(1), SFTPD(1), SFTPA1(1), SFTPB(2)
0.058 0.178 4.56e-10 4.27e-9 ✓ sig. Cluster 119 →
Constitutional mismatch repair deficiency Turcot syndrome
3 genes
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3 of 3 corroborated by 2+ sources
APC(3), PMS2(7), MLH1(7)
0.214 1.000 4.70e-10 4.39e-9 ✓ sig. Cluster 166 →
Atypical hemolytic uremic syndrome Macular and posterior pole degeneration
3 genes
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3 of 3 corroborated by 2+ sources
CFI(2), CD46(3), CFH(3)
0.214 1.000 4.70e-10 4.39e-9 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.