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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Melanocytic nevus Sebaceous gland disease
4 genes
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TP53(1), TYR(1), DEF8(1), SLC45A2(1)
0.182 0.364 1.41e-10 1.38e-9 ✓ sig. —
Marshall syndrome Myopia
7 genes
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7 of 7 corroborated by 2+ sources
COL2A1(2), COL11A1(6), LRP2(2), COL9A1(2), LOXL3(5), P3H2(5), GZF1(3)
0.048 0.368 1.41e-10 1.38e-9 ✓ sig. —
Interstitial cystitis Membranous glomerulonephritis
6 genes
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2 of 6 corroborated by 2+ sources
FKBPL(1), HLA-DQA1(2), HLA-DRB1(2), PPT2(1), SFTA2(1), MUCL3(1)
0.091 0.194 1.46e-10 1.43e-9 ✓ sig. Cluster 1 →
Blood coagulation disorder Venous thrombosis
5 genes
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4 of 5 corroborated by 2+ sources
F2(3), MTHFR(1), SERPINC1(2), F5(3), PROC(2)
0.119 0.227 1.53e-10 1.49e-9 ✓ sig. Cluster 55 →
Dysarthria Polyneuropathy
5 genes
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1 of 5 corroborated by 2+ sources
PNPLA6(2), SPG7(1), SMC1A(1), BIVM-ERCC5(1), ERCC5(1)
0.119 0.227 1.53e-10 1.49e-9 ✓ sig. Cluster 239 →
Brain cancer Brain neoplasms
4 genes
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APOBEC3C(1), CCT6B(1), FCHO2(1), FOXN3(1)
0.100 0.800 1.57e-10 1.54e-9 ✓ sig. —
Focal glomerulosclerosis Proteinuria
7 genes
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7 of 7 corroborated by 2+ sources
AGT(2), SPP1(2), CUBN(4), TGFB1(2), MPV17(2), NPHS1(2), HAVCR1(2)
0.075 0.167 1.59e-10 1.55e-9 ✓ sig. Cluster 30 →
Congenital anomaly of limb Congenital skin anomaly
4 genes
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4 of 4 corroborated by 2+ sources
TP63(2), IRF6(2), FGFR2(2), CHUK(2)
0.174 0.400 1.63e-10 1.59e-9 ✓ sig. Cluster 377 →
Congenital anomaly of limb Skin abnormalities
4 genes
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4 of 4 corroborated by 2+ sources
TP63(2), IRF6(2), FGFR2(2), CHUK(2)
0.174 0.400 1.63e-10 1.59e-9 ✓ sig. Cluster 377 →
Melas syndrome Optic neuropathy
4 genes
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1 of 4 corroborated by 2+ sources
ND1(2), ATP6(1), ATP8(1), ND4(1)
0.167 0.444 1.64e-10 1.60e-9 ✓ sig. Cluster 32 →
Congenital cartilage disorder Spondyloepiphyseal dysplasia
5 genes
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3 of 5 corroborated by 2+ sources
HSPG2(1), COL2A1(8), TRPV4(3), GLB1(1), CHST3(6)
0.114 0.278 1.66e-10 1.62e-9 ✓ sig. —
Hepatolenticular degeneration Oral submucous fibrosis
5 genes
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4 of 5 corroborated by 2+ sources
TNF(2), IL6(2), CXCL8(1), TIMP1(2), LOX(2)
0.116 0.250 1.71e-10 1.66e-9 ✓ sig. Cluster 76 →
Hypomyelinating leukodystrophy Pelizaeus-merzbacher disease
4 genes
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4 of 4 corroborated by 2+ sources
AIMP1(6), HSPD1(5), GJC2(6), MAL(4)
0.121 0.667 1.75e-10 1.70e-9 ✓ sig. —
Fanconi anemia Hereditary breast-ovarian cancer syndrome
4 genes
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4 of 4 corroborated by 2+ sources
PALB2(7), BRCA2(8), BRCA1(8), RAD51C(8)
0.098 0.800 1.75e-10 1.71e-9 ✓ sig. Cluster 132 →
Female infertility Uterine fibroid
16 genes
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6 of 16 corroborated by 2+ sources
BNC1(1), CHEK2(1), TP53(2), ESR2(2), TTC28(1), ESR1(3), IGF1(3), PAPPA(2), SYNE1(1), GREB1(1), CDC42(1), WNT4(3) +4 more
0.041 0.155 1.89e-10 1.84e-9 ✓ sig. —
Bilateral perisylvian polymicrogyria Perisylvian syndrome
3 genes
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3 of 3 corroborated by 2+ sources
PI4KA(2), ADGRG1(2), SRPX2(2)
0.273 1.000 1.97e-10 1.91e-9 ✓ sig. —
Brachycephaly Coronal craniosynostosis
3 genes
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FGFR3(1), TCF12(1), TWIST1(1)
0.273 1.000 1.97e-10 1.91e-9 ✓ sig. Cluster 127 →
Deafness, x-linked Hearing loss with stapes fixation
3 genes
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3 of 3 corroborated by 2+ sources
GJB6(3), GJB2(3), POU3F4(3)
0.273 1.000 1.97e-10 1.91e-9 ✓ sig. Cluster 210 →
Deafness, x-linked X-linked hearing loss with perilymphatic gusher
3 genes
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3 of 3 corroborated by 2+ sources
GJB6(2), GJB2(2), POU3F4(3)
0.273 1.000 1.97e-10 1.91e-9 ✓ sig. Cluster 210 →
Cancer Colorectal adenoma
17 genes
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RTEL1(1), TERT(1), HLA-DQA1(1), HLA-DRB1(1), PREX1(1), TCF7L2(1), TET2(1), TTC33(1), ATXN2(1), HLA-B(1), MUC22(1), SMAD7(1) +5 more
0.044 0.122 2.02e-10 1.96e-9 ✓ sig. Cluster 20 →
Bicuspid aortic valve Thoracic aortic aneurysm and aortic dissection
5 genes
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4 of 5 corroborated by 2+ sources
NOTCH1(3), SLC2A10(1), MYH11(5), ROBO4(2), GATA5(2)
0.098 0.357 2.04e-10 1.98e-9 ✓ sig. —
Cachexia Edema
5 genes
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TNF(1), IL6(1), PTGS2(1), PTHLH(1), CXCL8(1)
0.088 0.417 2.06e-10 2.00e-9 ✓ sig. —
Polycythemia Polycythemia vera
4 genes
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3 of 4 corroborated by 2+ sources
HBA1(2), H2BC4(1), HBB(2), JAK2(5)
0.160 0.444 2.08e-10 2.01e-9 ✓ sig. —
Anhedonia Memory disorders
6 genes
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6 of 6 corroborated by 2+ sources
COMT(2), HTR1A(2), DRD2(2), SLC6A3(2), SLC6A4(2), SLC17A7(2)
0.083 0.231 2.13e-10 2.07e-9 ✓ sig. —
Costello syndrome Non-immune hydrops fetalis
5 genes
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4 of 5 corroborated by 2+ sources
KRAS(3), SHOC2(2), PTPN11(3), HRAS(6), LRRC56(1)
0.093 0.385 2.14e-10 2.08e-9 ✓ sig. Cluster 42 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.