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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Diverticular disease Obstructive pulmonary disease
34 genes
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2 of 34 corroborated by 2+ sources
RREB1(1), ARHGEF28(1), ICA1L(1), MAML3(1), MAPKAP1(1), MMS22L(1), SCARA5(1), SLC35F3(2), TBX5(1), TRPS1(1), VAPA(1), EFEMP1(1) +22 more
0.044 0.137 2.64e-11 2.78e-10 ✓ sig. —
Anorexia nervosa Generalized anxiety disorder
11 genes
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ASB3(1), MAD1L1(1), MGMT(1), SPAG16(1), TMEM106B(1), ANKS1B(1), ADGRL4(1), FAM120A(1), IFI44(1), IGSF9B(1), LRFN5(1)
0.039 0.275 2.64e-11 2.78e-10 ✓ sig. Cluster 69 →
Epilepsy of infancy with migrating focal seizures Rolandic epilepsy
5 genes
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5 of 5 corroborated by 2+ sources
SCN1A(2), SCN2A(2), TBC1D24(5), KCNT1(2), PLCB1(2)
0.096 0.556 2.66e-11 2.79e-10 ✓ sig. —
Malignant migrating partial seizures of infancy Rolandic epilepsy
5 genes
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3 of 5 corroborated by 2+ sources
SCN1A(2), SCN2A(1), TBC1D24(5), KCNT1(1), PLCB1(2)
0.096 0.556 2.66e-11 2.79e-10 ✓ sig. —
Digestive system disease Esophageal adenocarcinoma
8 genes
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ALDH1A2(1), BCL3(1), CRTC1(1), FOXP1(1), KHDRBS2(1), DPP6(1), BARX1(1), GOLIM4(1)
0.066 0.229 2.68e-11 2.82e-10 ✓ sig. —
hereditary pheochromocytoma-paraganglioma Pheochromocytoma
4 genes
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4 of 4 corroborated by 2+ sources
SDHB(2), SDHD(2), TMEM127(4), MAX(4)
0.200 0.571 2.72e-11 2.85e-10 ✓ sig. Cluster 81 →
Arteriosclerosis Hypercholesterolemia
7 genes
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6 of 7 corroborated by 2+ sources
APOB(6), APOE(2), LDLR(6), ICAM1(2), PON1(2), ABCG5(1), VCAM1(2)
0.086 0.171 2.74e-11 2.88e-10 ✓ sig. Cluster 141 →
Autoinflammatory syndrome Hereditary hemophagocytic lymphohistiocytosis
4 genes
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4 of 4 corroborated by 2+ sources
PRF1(2), UNC13D(2), STX11(2), STXBP2(2)
0.105 1.000 2.82e-11 2.96e-10 ✓ sig. —
Glycogen phosphorylase kinase deficiency Glycogen storage disease
4 genes
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4 of 4 corroborated by 2+ sources
PHKA1(6), PHKA2(6), PHKB(7), PHKG2(8)
0.105 1.000 2.82e-11 2.96e-10 ✓ sig. —
Cleft lip Cleft lip and cleft of alveolar process of maxilla
4 genes
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2 of 4 corroborated by 2+ sources
TP63(2), IRF6(2), MSX1(1), NECTIN1(1)
0.105 1.000 2.82e-11 2.96e-10 ✓ sig. —
Breast neoplasms Endometriosis
41 genes
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40 of 41 corroborated by 2+ sources
WT1(2), MAP3K1(2), PTEN(2), EGFR(2), ESR2(2), GRIK2(2), PTPRD(2), RARB(3), RSPO3(2), BCL2(2), CYP19A1(2), ESR1(3) +29 more
0.048 0.109 2.85e-11 2.99e-10 ✓ sig. —
Jeune syndrome Saldino-noonan syndrome
5 genes
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3 of 5 corroborated by 2+ sources
NEK1(1), DYNC2H1(5), DYNC2I1(3), DYNC2I2(3), DYNLT2B(1)
0.104 0.500 2.94e-11 3.08e-10 ✓ sig. Cluster 22 →
Beckwith-wiedemann syndrome Silver-russell syndrome
4 genes
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2 of 4 corroborated by 2+ sources
IGF2(7), INS-IGF2(1), CDKN1C(8), -(1)
0.222 0.400 2.95e-11 3.09e-10 ✓ sig. Cluster 199 →
Ovarian serous carcinoma Uterine fibroid
26 genes
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RTEL1(1), TERT(1), TP53(1), TNFSF13(1), CTNNA2(1), PIK3C2B(1), TNFSF12-TNFSF13(1), TTC28(1), ESR1(1), PARP1(1), RBMS1(1), KREMEN1(1) +14 more
0.047 0.096 2.99e-11 3.13e-10 ✓ sig. Cluster 20 →
Nephronophthisis Polycystic kidney disease
7 genes
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5 of 7 corroborated by 2+ sources
MKKS(1), CC2D2A(1), NPHP3(6), CEP290(2), IFT140(5), NEK8(8), ANKS6(7)
0.085 0.175 3.13e-11 3.27e-10 ✓ sig. —
Limb girdle muscular dystrophy muscular dystrophy, limb-girdle, autosomal dominant
4 genes
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4 of 4 corroborated by 2+ sources
TNPO3(4), CAPN3(7), DNAJB6(5), HNRNPDL(5)
0.103 1.000 3.15e-11 3.30e-10 ✓ sig. Cluster 14 →
Congenital iris coloboma Congenital ocular coloboma
4 genes
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PAX6(1), ACTG1(1), FZD5(1), SALL2(1)
0.143 0.800 3.19e-11 3.33e-10 ✓ sig. Cluster 272 →
Cardiac arrest Paroxysmal familial ventricular fibrillation
4 genes
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2 of 4 corroborated by 2+ sources
DSP(1), DPP6(2), RYR2(1), SCN5A(2)
0.143 0.800 3.19e-11 3.33e-10 ✓ sig. Cluster 4 →
Dyskeratosis congenita Telomere syndrome
4 genes
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4 of 4 corroborated by 2+ sources
RTEL1(6), TERT(8), PARN(6), WRAP53(8)
0.143 0.800 3.19e-11 3.33e-10 ✓ sig. Cluster 64 →
Methemoglobinemia Unstable hemoglobin disease
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(5), HBA2(3), HBB(7)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. Cluster 72 →
Bethlem myopathy Collagen vi muscular dystrophy
3 genes
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3 of 3 corroborated by 2+ sources
COL6A3(6), COL6A1(6), COL6A2(6)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. Cluster 393 →
Bethlem myopathy collagen 6-related myopathy
3 genes
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3 of 3 corroborated by 2+ sources
COL6A3(7), COL6A1(7), COL6A2(7)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. Cluster 393 →
collagen 6-related myopathy Collagen vi-related myopathy
3 genes
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3 of 3 corroborated by 2+ sources
COL6A3(2), COL6A1(3), COL6A2(2)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. —
Collagen vi muscular dystrophy Collagen vi-related myopathy
3 genes
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3 of 3 corroborated by 2+ sources
COL6A3(4), COL6A1(5), COL6A2(4)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. —
Collagen vi-related myopathy Digenic alport syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(3), COL4A3(3), COL4A4(3)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. Cluster 49 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.