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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hypertrophic neuropathy Peroneal muscle atrophy
38 genes
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4 of 38 corroborated by 2+ sources
DHTKD1(1), AARS1(1), VCP(1), SLC12A6(1), EGR2(2), KIF1B(1), MME(1), TRPV4(1), DYNC1H1(1), FIG4(1), MFN2(1), NEFL(1) +26 more
0.950 1.000 1.61e-113 2.20e-111 ✓ sig. Cluster 14 →
Peroneal muscle atrophy Roussy-levy syndrome
38 genes
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2 of 38 corroborated by 2+ sources
DHTKD1(1), AARS1(1), VCP(1), SLC12A6(1), EGR2(1), KIF1B(1), MME(1), TRPV4(1), DYNC1H1(1), FIG4(1), MFN2(1), NEFL(1) +26 more
0.950 1.000 1.61e-113 2.20e-111 ✓ sig. Cluster 14 →
Dejerine-sottas disease Peroneal muscle atrophy
38 genes
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4 of 38 corroborated by 2+ sources
DHTKD1(1), AARS1(1), VCP(1), SLC12A6(1), EGR2(3), KIF1B(1), MME(1), TRPV4(1), DYNC1H1(1), FIG4(1), MFN2(1), NEFL(1) +26 more
0.950 1.000 1.61e-113 2.20e-111 ✓ sig. Cluster 14 →
Diabetes mellitus type 1 Psoriasis
176 genes
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54 of 176 corroborated by 2+ sources
BPTF(1), RERE(1), COLEC10(1), CAT(2), CP(2), SH2B3(3), IFIH1(3), BLTP1(1), ADGRL2(1), ANKRD55(1), ATXN2L(1), BANK1(2) +164 more
0.170 0.369 4.02e-113 5.46e-111 ✓ sig. —
Attention deficit hyperactivity disorder Obsessive-compulsive disorder
148 genes
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6 of 148 corroborated by 2+ sources
SOX5(1), RAI1(1), RERE(1), COMT(2), ATP2A2(1), AKAP6(1), BANK1(1), BRAF(1), C6orf118(1), C8orf90(1), CACNA2D3(1), CACNB2(1) +136 more
0.124 0.632 4.51e-111 6.09e-109 ✓ sig. —
Endometrial cancer Hepatocellular carcinoma
111 genes
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8 of 111 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(2), TP53(4), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +99 more
0.156 0.638 2.99e-110 4.01e-108 ✓ sig. Cluster 56 →
Bipolar depression Bipolar disorder
102 genes
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72 of 102 corroborated by 2+ sources
COMT(2), INS(2), PER3(1), CACNA1D(2), SERPINA1(2), ATP1A3(1), ANK3(3), BRD1(1), DISC1(1), FADS2(3), FSTL5(3), GCH1(1) +90 more
0.083 0.971 1.32e-109 1.76e-107 ✓ sig. Cluster 2 →
Autoimmune thyroid disease Hypothyroidism
89 genes
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9 of 89 corroborated by 2+ sources
RERE(1), SH2B3(1), IFIH1(1), BTNL2(1), C12orf42(1), CAMK4(1), ELMO1(1), ERBB3(1), FAM76B(1), GIGYF1(1), HLA-DQA1(2), HLA-DRA(2) +77 more
0.207 0.618 2.72e-109 3.60e-107 ✓ sig. —
Aortic stenosis Aortic valve disease
49 genes
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HMGA2(1), ACAN(1), ALPL(1), PRRX1(1), ALDH1A2(1), ARHGAP24(1), ASCC2(1), FADS1(1), FADS2(1), FLNB(1), HCN1(1), LDLR(1) +37 more
0.527 0.817 5.20e-109 6.84e-107 ✓ sig. —
Cognition disorder Delirium, dementia, and cognitive disorders
44 genes
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44 of 44 corroborated by 2+ sources
COMT(2), APP(2), PSEN1(2), AGT(2), APOE(3), IGF2(2), LAMB2(2), MAPT(2), SETD7(2), BCHE(2), CDK5R1(2), CRH(2) +32 more
0.657 0.815 2.12e-108 2.77e-106 ✓ sig. —
Cleft lip Complete unilateral cleft lip
36 genes
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25 of 36 corroborated by 2+ sources
FGF8(2), ABCA4(2), FGFR3(2), KIF7(1), TP63(2), FGF10(2), IRF6(2), SPRY2(2), TCN2(2), NOS3(2), MTHFR(2), BMP4(1) +24 more
0.947 1.000 2.56e-108 3.32e-106 ✓ sig. Cluster 49 →
Leigh syndrome Mitochondrial disease
72 genes
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67 of 72 corroborated by 2+ sources
HIBCH(3), TRMU(3), IARS2(4), MTRFR(3), NARS2(3), NDUFA10(5), NDUFA12(2), NDUFA9(3), NDUFAF2(4), NDUFAF6(4), ND2(1), NDUFS3(4) +60 more
0.259 0.673 1.62e-107 2.09e-105 ✓ sig. Cluster 45 →
Non-neoplastic peripheral nervous system disease Peripheral neuropathy
54 genes
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DPYD(1), SLC12A6(1), GFAP(1), ABCA1(1), CACNA1H(1), ERCC1(1), MMP3(1), TCF4(1), GSTP1(1), GSTT1(1), ICAM1(1), IGF1(1) +42 more
0.280 1.000 4.24e-107 5.44e-105 ✓ sig. Cluster 238 →
Myocardial infarction Myocardial ischemia
144 genes
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84 of 144 corroborated by 2+ sources
PRDM16(2), APOA1(1), SH2B3(3), TP53(1), SERPINA1(1), ABCG8(2), ACE(2), AGT(2), APOB(2), APOC1(1), APOE(3), CDH13(1) +132 more
0.174 0.368 1.10e-106 1.40e-104 ✓ sig. —
Hearing loss nonsyndromic genetic hearing loss
72 genes
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72 of 72 corroborated by 2+ sources
CEACAM16(4), ESRRB(3), EYA4(3), GIPC3(3), GRAP(4), MYO15A(3), NARS2(5), OTOF(3), OTOGL(3), PCDH15(4), OTOG(3), TMC1(2) +60 more
0.181 0.878 1.17e-106 1.48e-104 ✓ sig. Cluster 26 →
Autoimmune thyroid disease Diabetes mellitus type 1
93 genes
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20 of 93 corroborated by 2+ sources
RERE(1), SH2B3(3), IFIH1(1), ADGRL2(1), ANKRD55(1), ATXN2L(1), BANK1(1), BTNL2(1), CAMK4(1), DAG1(1), ERBB3(1), FAM76B(1) +81 more
0.176 0.646 3.53e-106 4.44e-104 ✓ sig. —
Hypothyroidism Rheumatoid arthritis
148 genes
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30 of 148 corroborated by 2+ sources
SH2B3(1), RBPJ(3), BTNL2(2), ELMO1(1), ERBB3(1), ETS1(1), FADS1(1), FADS2(1), FAM76B(1), FKBPL(1), GABBR1(1), GLIS3(1) +136 more
0.166 0.396 3.98e-106 4.99e-104 ✓ sig. Cluster 291 →
Inflammatory bowel disease Rheumatoid arthritis
191 genes
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61 of 191 corroborated by 2+ sources
SH2B3(1), RBPJ(3), BLTP1(1), ABT1(1), AFF3(3), ANKRD55(3), BSN(1), BTNL2(2), CCRL2(1), DLGAP2(1), ELMO1(1), EMSY(1) +179 more
0.164 0.289 4.56e-106 5.67e-104 ✓ sig. —
Anorexia nervosa Bipolar disorder
154 genes
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35 of 154 corroborated by 2+ sources
SOX5(1), RERE(1), WWOX(1), ATP2A2(1), ZSWIM6(1), ALMS1(1), AKAP6(2), BANK1(1), BRAF(1), BSN(1), C8orf90(1), CACNB2(2) +142 more
0.117 0.614 5.96e-106 7.37e-104 ✓ sig. —
Pituitary short stature Sheehan syndrome
34 genes
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FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.971 1.000 1.29e-104 1.57e-102 ✓ sig. Cluster 36 →
Growth hormone deficiency Pituitary short stature
34 genes
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FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.971 1.000 1.29e-104 1.57e-102 ✓ sig. Cluster 36 →
Growth hormone deficiency Sheehan syndrome
34 genes
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FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.971 1.000 1.29e-104 1.57e-102 ✓ sig. Cluster 36 →
Atrial fibrillation Atrial flutter
81 genes
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52 of 81 corroborated by 2+ sources
UBE4B(3), JMJD1C(1), OPLAH(1), BRWD1(1), PRRX1(3), AKAP6(3), ESR2(3), FBXO11(1), GORAB(1), KCNN3(3), KDM1B(3), MAPT(3) +69 more
0.094 1.000 1.10e-103 1.33e-101 ✓ sig. —
Aplasia of the vermis Joubert syndrome
43 genes
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40 of 43 corroborated by 2+ sources
KIF7(1), CPLANE1(6), CC2D2A(5), HYLS1(3), RPGRIP1L(5), NPHP3(1), TMEM67(6), ARL3(5), NPHP1(6), SUFU(5), CEP290(6), TMEM138(6) +31 more
0.614 0.796 1.57e-103 1.89e-101 ✓ sig. Cluster 7 →
Inflammatory skin disease Psoriasis
76 genes
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13 of 76 corroborated by 2+ sources
IFIH1(3), BLTP1(1), ANO3(1), CSMD1(3), EBF1(1), ELMO1(1), EMSY(1), MGMT(1), PTPRN2(1), RAP1GAP2(1), RASIP1(1), SMARCA4(1) +64 more
0.104 1.000 5.45e-103 6.51e-101 ✓ sig. —

Showing 25 of 20918 pairs, sorted by significance (ascending). Click a column header to sort.