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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cardiac embolism Glaucoma
9 genes
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3 of 9 corroborated by 2+ sources
GLIS3(2), KCNN3(1), RBFOX1(1), CAV2(3), ABO(1), TEK(5), GRM5(1), HNRNPA1L3(1), TYR(1)
0.033 0.180 5.40e-8 3.94e-7 ✓ sig. —
Cecal neoplasms Uterine neoplasms
3 genes
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CTNNB1(1), KRAS(1), CCND1(1)
0.075 0.750 5.54e-8 4.04e-7 ✓ sig. —
Cerebellar atrophy Dandy-walker syndrome
4 genes
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HYLS1(1), PUS3(1), MAGED2(1), TMEM47(1)
0.085 0.200 5.55e-8 4.05e-7 ✓ sig. —
Aortic disease Bonnevie-ullrich syndrome
3 genes
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3 of 3 corroborated by 2+ sources
CAT(2), SOD2(2), SOD1(2)
0.125 0.429 5.56e-8 4.05e-7 ✓ sig. Cluster 285 →
Costello syndrome Myelomonocytic leukemia
3 genes
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3 of 3 corroborated by 2+ sources
KRAS(4), NRAS(4), PTPN11(6)
0.143 0.300 5.62e-8 4.10e-7 ✓ sig. Cluster 42 →
Occupational disease Pleural diseases
3 genes
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2 of 3 corroborated by 2+ sources
TIMP2(2), TGFB1(2), CARD8(1)
0.143 0.300 5.62e-8 4.10e-7 ✓ sig. Cluster 126 →
Hyperhomocysteinemia Neural tube defect
4 genes
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4 of 4 corroborated by 2+ sources
MTHFR(2), MTRR(2), CBS(2), MTR(2)
0.069 0.308 5.82e-8 4.24e-7 ✓ sig. —
Congenital fiber type disproportion myopathy Congenital structural myopathy
3 genes
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1 of 3 corroborated by 2+ sources
MTM1(1), RYR1(1), TPM3(3)
0.143 0.273 5.95e-8 4.33e-7 ✓ sig. Cluster 189 →
Autoimmune musculoskeletal system disorder Cutaneous lupus erythematosus
3 genes
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HLA-DQA1(1), HLA-DRB1(1), ITGAM(1)
0.143 0.273 5.95e-8 4.33e-7 ✓ sig. Cluster 1 →
Adenoid cystic carcinoma Coffin-siris syndrome
5 genes
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5 of 5 corroborated by 2+ sources
ARID1A(5), SMARCA2(2), SMARCE1(7), SOX4(6), SOX11(4)
0.044 0.294 6.08e-8 4.42e-7 ✓ sig. —
Cystic fibrosis Cystic fibrosis-related diabetes
3 genes
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1 of 3 corroborated by 2+ sources
CEBPB(1), RAB7B(1), SLC26A9(4)
0.048 1.000 6.22e-8 4.52e-7 ✓ sig. —
Endometrial neoplasms Pancreatic neoplasms
10 genes
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3 of 10 corroborated by 2+ sources
HNF1B(2), PTEN(1), MSH6(2), PPARG(2), CXCL8(1), CNR2(1), CNR1(1), TNFSF10(1), CDH1(1), MYC(1)
0.042 0.085 6.24e-8 4.53e-7 ✓ sig. —
Cor pulmonale Venous insufficiency
3 genes
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ABO(1), SLC19A2(1), F5(1)
0.136 0.333 6.26e-8 4.55e-7 ✓ sig. —
Myasthenia gravis Nasopharyngeal neoplasms
5 genes
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4 of 5 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), HLA-DQB1(2), HLA-B(2), C6orf15(1)
0.065 0.132 6.26e-8 4.55e-7 ✓ sig. Cluster 1 →
Congenital nasopharyngeal atresia Male infertility
6 genes
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1 of 6 corroborated by 2+ sources
DNAH5(1), CCDC40(1), DNAH11(1), DNAI1(1), ODAD2(1), DNAAF4(2)
0.044 0.200 6.32e-8 4.59e-7 ✓ sig. —
Edema Hypercalcemia
4 genes
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4 of 4 corroborated by 2+ sources
TNF(2), IL6(2), PTHLH(2), CALCA(2)
0.068 0.308 6.34e-8 4.60e-7 ✓ sig. —
Kidney failure Preeclampsia
12 genes
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9 of 12 corroborated by 2+ sources
CP(2), ACE(2), AGT(2), SERPINE1(2), NOS3(2), HMOX1(2), MTHFR(2), PPARG(2), FGF5(1), PRDM8(1), FTO(1), EDN1(2)
0.036 0.122 6.36e-8 4.62e-7 ✓ sig. Cluster 139 →
Pontocerebellar hypoplasia Visual disorder
4 genes
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4 of 4 corroborated by 2+ sources
TSEN2(7), TSEN54(7), CLN5(2), TSEN34(6)
0.083 0.200 6.37e-8 4.62e-7 ✓ sig. —
Neuronal ceroid lipofuscinosis Visual disorder
4 genes
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4 of 4 corroborated by 2+ sources
CLN3(7), CLN6(7), PPT1(7), CLN5(7)
0.083 0.200 6.37e-8 4.62e-7 ✓ sig. Cluster 51 →
Oral submucous fibrosis Varicose veins
3 genes
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3 of 3 corroborated by 2+ sources
MMP1(2), MMP9(2), TIMP1(2)
0.120 0.429 6.54e-8 4.74e-7 ✓ sig. —
Cryptophthalmos syndrome Fraser syndrome
3 genes
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3 of 3 corroborated by 2+ sources
FRAS1(7), GRIP1(6), FREM2(6)
0.120 0.429 6.54e-8 4.74e-7 ✓ sig. —
Antiphospholipid syndrome Benign hereditary chorea
3 genes
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0.120 0.429 6.54e-8 4.74e-7 ✓ sig. Cluster 1 →
Exudative retinopathy Retinopathy of prematurity
3 genes
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2 of 3 corroborated by 2+ sources
PRSS23(1), FZD4(2), NDP(2)
0.120 0.429 6.54e-8 4.74e-7 ✓ sig. Cluster 288 →
Diabetes microvascular complications Transient ischemic attack
3 genes
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3 of 3 corroborated by 2+ sources
EPO(3), SOD2(3), IL1RN(3)
0.107 0.500 6.63e-8 4.80e-7 ✓ sig. Cluster 305 →
Atrial septal defect Hypoplastic left heart syndrome
4 genes
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3 of 4 corroborated by 2+ sources
FOXP1(1), MYH6(6), TBX20(6), NKX2-5(6)
0.080 0.222 6.69e-8 4.84e-7 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.