Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Differentiated thyroid carcinoma Thyroid cancer
8 genes
Show details
2 of 8 corroborated by 2+ sources
TERT(2), FOXE1(2), TRMO(1), NRG1(1), SLK(1), STN1(1), MBIP(1), PCNX2(1)
0.105 0.235 9.84e-14 1.27e-12 ✓ sig. Cluster 130 →
Microphthalmos Nanophthalmos
6 genes
Show details
6 of 6 corroborated by 2+ sources
PRSS56(3), SOX2(2), OTX2(2), RAX(2), ALDH1A3(2), MFRP(6)
0.140 0.500 9.63e-14 1.24e-12 ✓ sig. Cluster 56 →
Berardinelli-seip congenital lipodystrophy Congenital generalized lipodystrophy
4 genes
Show details
4 of 4 corroborated by 2+ sources
CAV1(4), BSCL2(4), CAVIN1(4), AGPAT2(5)
0.444 0.667 9.61e-14 1.24e-12 ✓ sig. Cluster 71 →
Oral cavity carcinoma Oropharyngeal cancer
8 genes
Show details
LAMC3(1), TFAP2A(1), HLA-DQB1(1), HLA-B(1), DYSF(1), ADH1B(1), ABTB3(1), TRIM5(1)
0.099 0.286 9.57e-14 1.24e-12 ✓ sig. —
Congenital cartilage disorder Stickler syndrome
6 genes
Show details
5 of 6 corroborated by 2+ sources
COL2A1(7), COL11A1(6), COL11A2(1), COL9A1(8), COL9A2(7), COL9A3(7)
0.154 0.429 9.54e-14 1.23e-12 ✓ sig. —
Cone-rod dystrophy Retinal degeneration
9 genes
Show details
9 of 9 corroborated by 2+ sources
PDE6B(2), CRX(8), RPE65(2), NMNAT1(3), RHO(2), RPGR(4), RAX2(5), UBAP1L(3), RDH12(2)
0.087 0.243 9.24e-14 1.20e-12 ✓ sig. Cluster 7 →
Mesothelioma Ovarian neoplasms
16 genes
Show details
TP53(1), EGFR(1), SOD2(1), IL6(1), CTNNB1(1), CXCL8(1), MET(1), CDH1(1), SLC2A1(1), NME2(1), BAP1(1), FGF1(1) +4 more
0.061 0.122 9.07e-14 1.17e-12 ✓ sig. Cluster 5 →
Erythrokeratodermia variabilis Greither disease
4 genes
Show details
4 of 4 corroborated by 2+ sources
GJA1(5), GJB3(7), PERP(4), GJB4(6)
0.364 1.000 8.97e-14 1.16e-12 ✓ sig. Cluster 92 →
Congenital malformation syndromes predominantly affecting facial appearance Goldenhar syndrome
4 genes
Show details
RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.364 1.000 8.97e-14 1.16e-12 ✓ sig. Cluster 48 →
Goldenhar syndrome Warburg micro syndrome
4 genes
Show details
4 of 4 corroborated by 2+ sources
RAB18(6), RAB3GAP1(5), RAB3GAP2(5), TBC1D20(5)
0.364 1.000 8.97e-14 1.16e-12 ✓ sig. Cluster 48 →
Carbohydrate metabolism disease Intestinal disaccharide malabsorption
4 genes
Show details
HK1(1), GCK(1), G6PC2(1), SPC25(1)
0.364 1.000 8.97e-14 1.16e-12 ✓ sig. —
Deafness, x-linked X-linked nonsyndromic hearing loss
4 genes
Show details
4 of 4 corroborated by 2+ sources
PRPS1(4), POU3F4(2), SMPX(4), COL4A6(4)
0.364 1.000 8.97e-14 1.16e-12 ✓ sig. —
Sick sinus syndrome Wolff-parkinson-white syndrome
7 genes
Show details
4 of 7 corroborated by 2+ sources
PITX2(2), MYH6(3), LMNA(1), SCN5A(6), TTN(2), ANK2(1), SNTA1(1)
0.111 0.389 8.81e-14 1.15e-12 ✓ sig. Cluster 4 →
Congenital aneurysm of ascending aorta familial thoracic aortic aneurysm and aortic dissection
5 genes
Show details
5 of 5 corroborated by 2+ sources
FBN1(2), FOXE3(2), MYH11(2), LOX(2), MYLK(2)
0.250 0.417 8.68e-14 1.13e-12 ✓ sig. Cluster 12 →
Diabetes microvascular complications Diabetic angiopathies
5 genes
Show details
5 of 5 corroborated by 2+ sources
VEGFA(3), EPO(3), PON1(2), SOD2(3), IL1RN(3)
0.167 0.833 8.17e-14 1.06e-12 ✓ sig. —
Diabetes microvascular complications Diabetic peripheral angiopathy
5 genes
Show details
5 of 5 corroborated by 2+ sources
VEGFA(3), EPO(3), PON1(2), SOD2(3), IL1RN(3)
0.167 0.833 8.17e-14 1.06e-12 ✓ sig. —
Psoriatic arthritis Toxic epidermal necrolysis
9 genes
Show details
2 of 9 corroborated by 2+ sources
HLA-C(2), TAP2(1), POU5F1(1), HLA-B(2), MICA(1), MUC22(1), SLC22A23(1), HLA-F(1), BAG6(1)
0.088 0.243 8.13e-14 1.06e-12 ✓ sig. —
Congenital muscular dystrophy Congenital muscular dystrophy due to dystroglycanopathy
5 genes
Show details
5 of 5 corroborated by 2+ sources
GMPPB(3), LARGE1(2), CRPPA(3), POMGNT1(3), FKRP(4)
0.200 0.714 7.66e-14 9.99e-13 ✓ sig. Cluster 14 →
Psoriatic arthritis Stevens-johnson syndrome
11 genes
Show details
4 of 11 corroborated by 2+ sources
HLA-C(2), TAP2(1), POU5F1(1), HLA-DQB1(2), HLA-B(4), MICA(1), MUC22(1), NOS2(3), SLC22A23(1), HLA-F(1), BAG6(1)
0.078 0.151 7.50e-14 9.78e-13 ✓ sig. —
Apert syndrome Cryptophthalmos syndrome
4 genes
Show details
RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.444 0.800 7.47e-14 9.76e-13 ✓ sig. Cluster 48 →
Apert syndrome Cyclocephaly
4 genes
Show details
RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.444 0.800 7.47e-14 9.76e-13 ✓ sig. Cluster 48 →
Hyperthyroidism Toxic nodular goiter
7 genes
Show details
NFIA(1), NRG1(1), TG(1), FAM227B(1), PRDM11(1), FGF7(1), MICOS10(1)
0.109 0.412 7.18e-14 9.39e-13 ✓ sig. —
Epiphyseal dysplasia Stickler syndrome
5 genes
Show details
4 of 5 corroborated by 2+ sources
COL2A1(7), COL1A1(1), COL9A1(8), COL9A2(7), COL9A3(8)
0.250 0.500 6.98e-14 9.13e-13 ✓ sig. Cluster 248 →
Cystic kidney disease Meckel-gruber syndrome
7 genes
Show details
7 of 7 corroborated by 2+ sources
CC2D2A(5), RPGRIP1L(5), TMEM67(6), CEP290(5), TMEM216(6), MKS1(7), TCTN2(5)
0.132 0.269 6.72e-14 8.79e-13 ✓ sig. Cluster 8 →
Congenital hyperinsulinism Hypoglycemia
5 genes
Show details
4 of 5 corroborated by 2+ sources
ABCC8(4), HNF4A(2), KCNJ11(2), GCK(2), GLUD1(1)
0.172 0.833 6.71e-14 8.79e-13 ✓ sig. Cluster 36 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.