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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Ischemic stroke Thrombophilia
7 genes
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7 of 7 corroborated by 2+ sources
F2(6), MTHFR(3), PLAT(4), F5(6), PROC(5), PROS1(5), THBD(3)
0.091 0.219 9.00e-12 9.92e-11 ✓ sig. Cluster 55 →
Neuroblastoma Urinary bladder neoplasms
15 genes
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2 of 15 corroborated by 2+ sources
TERT(1), TP53(2), ARID1A(1), ESR1(1), TNF(1), KRAS(1), MMP9(1), IFNB1(1), MYC(1), AQP3(2), ISL1(1), CDKN2A(1) +3 more
0.054 0.106 8.69e-12 9.58e-11 ✓ sig. Cluster 5 →
Leukemia Myeloid leukemia
10 genes
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3 of 10 corroborated by 2+ sources
WT1(1), CHEK2(2), ERG(1), JAK2(3), DNMT3A(3), TNFSF10(1), AQP9(1), PTPN11(1), KMT2A(1), KMT2E(1)
0.054 0.233 8.28e-12 9.14e-11 ✓ sig. Cluster 53 →
Jeune thoracic dystrophy Saldino-noonan syndrome
5 genes
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NEK1(1), DYNC2H1(1), DYNC2I1(1), DYNC2I2(1), DYNLT2B(1)
0.128 0.500 8.23e-12 9.09e-11 ✓ sig. Cluster 22 →
Craniodiaphyseal dysplasia Jeune thoracic dystrophy
5 genes
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5 of 5 corroborated by 2+ sources
IFT43(5), IFT140(2), IFT52(2), WDR19(6), WDR35(6)
0.128 0.500 8.23e-12 9.09e-11 ✓ sig. Cluster 22 →
Hereditary motor and sensory neuropathies Sensory neuropathy
6 genes
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WNK1(1), KIF1A(1), MPZ(1), GDAP1(1), GJB1(1), RETREG1(1)
0.081 0.462 8.24e-12 9.09e-11 ✓ sig. —
Edema Hyperalgesia
9 genes
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TNF(1), IL6(1), TAC1(1), PTGS2(1), KNG1(1), PTHLH(1), CXCL8(1), VIP(1), CALCA(1)
0.069 0.184 8.09e-12 8.95e-11 ✓ sig. Cluster 13 →
Autoimmune hepatitis Lupus nephritis
7 genes
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4 of 7 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(1), HLA-DQB1(2), IFNG(2), CCL2(2), CTLA4(1), PDCD1(1)
0.095 0.184 7.87e-12 8.71e-11 ✓ sig. —
Age-related macular degeneration Retinopathy
9 genes
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6 of 9 corroborated by 2+ sources
ABCA4(3), CFI(4), COL4A4(1), C2(3), C3(3), CETP(1), CFH(3), RDH5(1), ARMS2(3)
0.071 0.173 7.50e-12 8.30e-11 ✓ sig. Cluster 187 →
mismatch repair cancer syndrome 1 Rhabdomyosarcoma
4 genes
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4 of 4 corroborated by 2+ sources
MSH2(2), MSH6(2), PMS2(3), MLH1(2)
0.143 1.000 7.50e-12 8.30e-11 ✓ sig. Cluster 166 →
Muir-torre syndrome Rhabdomyosarcoma
4 genes
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3 of 4 corroborated by 2+ sources
MSH2(5), MSH6(1), PMS2(3), MLH1(5)
0.143 1.000 7.50e-12 8.30e-11 ✓ sig. Cluster 166 →
Kidney cancer Myeloproliferative disorder
9 genes
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2 of 9 corroborated by 2+ sources
TERT(2), TP53(2), MAD1L1(1), ATM(1), RBPMS(1), STN1(1), PMF1(1), PMF1-BGLAP(1), MYNN(1)
0.071 0.170 7.18e-12 7.96e-11 ✓ sig. —
Adenoid cystic carcinoma Urinary bladder neoplasms
13 genes
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TP53(1), ARID1A(1), KMT2C(1), CREBBP(1), CDH1(1), ATM(1), SMC1A(1), KDM6A(1), HRAS(1), EP300(1), FANCA(1), CCND1(1) +1 more
0.057 0.130 7.17e-12 7.95e-11 ✓ sig. —
Nasal polyp Upper respiratory tract disorder
6 genes
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IL18R1(1), IL7R(1), IL1RL1(1), IL33(1), RANBP6(1), TSLP(1)
0.111 0.300 6.66e-12 7.40e-11 ✓ sig. Cluster 137 →
Congenital vertebral-cardiac-renal anomalies syndrome Vertebral, cardiac, renal, and limb defects syndrome
3 genes
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3 of 3 corroborated by 2+ sources
KYNU(7), HAAO(7), NADSYN1(4)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 386 →
Coronary artery vasospasm Coronary vasospasm
3 genes
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3 of 3 corroborated by 2+ sources
NOS3(2), PON1(2), ARHGAP9(2)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 315 →
Craniofacial ulnar renal syndrome Malpuech facial clefting syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COLEC10(2), COLEC11(2), MASP1(2)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 353 →
Cystine urolithiasis Cystinuria
3 genes
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2 of 3 corroborated by 2+ sources
SLC7A9(8), PREPL(1), SLC3A1(7)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. —
Delta-beta thalassemia Hemoglobin f disease
3 genes
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2 of 3 corroborated by 2+ sources
HBB(3), HBG2(1), HBG1(3)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 19 →
Hypercalcemic tumoral calcinosis Tumoral calcinosis
3 genes
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3 of 3 corroborated by 2+ sources
KL(4), GALNT3(6), FGF23(4)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 407 →
Hyperphosphatemic tumoral calcinosis Tumoral calcinosis
3 genes
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3 of 3 corroborated by 2+ sources
KL(4), GALNT3(7), FGF23(5)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 407 →
Bouillaud’s disease Oropharyngeal neoplasms
3 genes
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3 of 3 corroborated by 2+ sources
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 1 →
Erythromelalgia Paroxysmal extreme pain disorder
3 genes
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1 of 3 corroborated by 2+ sources
SCN10A(1), SCN11A(1), SCN9A(6)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 164 →
Glycinuria with/without oxalate urolithiasis Hyperglycinuria
3 genes
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3 of 3 corroborated by 2+ sources
SLC36A2(5), SLC6A19(2), SLC6A20(2)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. —
3mc syndrome Craniofacial ulnar renal syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COLEC10(2), COLEC11(2), MASP1(3)
0.600 1.000 6.58e-12 7.30e-11 ✓ sig. Cluster 353 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.