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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Optic neuropathy Postaxial polydactyly
4 genes
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ND1(1), ATP6(1), ATP8(1), ND4(1)
0.148 0.444 3.21e-10 3.05e-9 ✓ sig. Cluster 32 →
Bladder cancer Urinary bladder cancer
4 genes
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4 of 4 corroborated by 2+ sources
FGFR3(3), KRAS(2), RB1(2), HRAS(2)
0.060 1.000 3.08e-10 2.93e-9 ✓ sig. —
Liver neoplasms Neuroblastoma
14 genes
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3 of 14 corroborated by 2+ sources
TERT(1), TP53(2), HLA-DQA1(1), ESR1(1), TNF(1), FHIT(2), TRIO(2), KRAS(1), HGF(1), TNFSF10(1), MYC(1), CDKN2A(1) +2 more
0.048 0.093 2.82e-10 2.68e-9 ✓ sig. Cluster 5 →
Pena-shokeir syndrome Postsynaptic congenital myasthenic syndrome
5 genes
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5 of 5 corroborated by 2+ sources
SCN4A(3), RAPSN(3), CHRND(3), MUSK(4), DOK7(2)
0.083 0.417 2.80e-10 2.67e-9 ✓ sig. —
Anorexia Hyperkinesia
5 genes
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5 of 5 corroborated by 2+ sources
GCG(2), IL2(2), NPY(2), CRHR1(2), CCK(2)
0.106 0.278 2.77e-10 2.64e-9 ✓ sig. —
Autoimmune hepatitis T-cell leukemia-lymphoma
6 genes
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6 of 6 corroborated by 2+ sources
ICOS(2), IL10(2), IL2(2), IL4(2), IFNG(2), CTLA4(2)
0.087 0.167 2.76e-10 2.63e-9 ✓ sig. —
Right atrial isomerism Transposition of the great arteries
3 genes
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1 of 3 corroborated by 2+ sources
UPF1(1), CERS1(1), GDF1(4)
0.250 1.000 2.71e-10 2.59e-9 ✓ sig. Cluster 113 →
Digenic alport syndrome Hematuria
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(2), COL4A3(5), COL4A4(6)
0.250 1.000 2.71e-10 2.59e-9 ✓ sig. Cluster 49 →
Bullous pemphigoid Pemphigus
4 genes
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3 of 4 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(3), IL2(1), HLA-DQB1(3)
0.143 0.500 2.64e-10 2.52e-9 ✓ sig. Cluster 1 →
Platelet-type bleeding disorder Von willebrand disorder
4 genes
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4 of 4 corroborated by 2+ sources
ITGA2(2), ITGA2B(5), P2RY12(6), GP6(7)
0.154 0.444 2.60e-10 2.48e-9 ✓ sig. —
Exudative vitreoretinopathy Retinopathy of prematurity
4 genes
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3 of 4 corroborated by 2+ sources
PRSS23(1), FZD4(6), NDP(5), LRP5(5)
0.154 0.444 2.60e-10 2.48e-9 ✓ sig. Cluster 288 →
Splenic disease Splenomegaly
4 genes
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4 of 4 corroborated by 2+ sources
CYP1A2(2), FAS(2), APC(2), AHR(2)
0.154 0.444 2.60e-10 2.48e-9 ✓ sig. —
Congenital total cataract Posterior subcapsular cataract
4 genes
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3 of 4 corroborated by 2+ sources
CRYBB2(3), EPHA2(3), MIP(1), LEMD2(3)
0.167 0.364 2.55e-10 2.44e-9 ✓ sig. Cluster 43 →
Congenital total cataract Lamellar cataract
4 genes
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4 of 4 corroborated by 2+ sources
CRYAA(3), HSF4(3), MIP(3), CRYGB(3)
0.167 0.364 2.55e-10 2.44e-9 ✓ sig. Cluster 43 →
Mouth neoplasms Penile neoplasms
4 genes
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TP53(1), KRAS(1), HRAS(1), PIK3CA(1)
0.063 1.000 2.54e-10 2.44e-9 ✓ sig. —
Aplasia of the vermis Gastrointestinal stromal tumor
7 genes
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7 of 7 corroborated by 2+ sources
CC2D2A(2), SUFU(2), TMEM231(2), IFT172(2), TMEM17(2), B9D1(2), C2CD3(2)
0.074 0.149 2.46e-10 2.36e-9 ✓ sig. —
Mouth neoplasms Tongue neoplasms
5 genes
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SOD2(1), PTGS2(1), HSPB1(1), HRAS(1), CRYAB(1)
0.072 0.500 2.42e-10 2.32e-9 ✓ sig. —
Autoimmune polyendocrine syndrome Uveomeningoencephalitic syndrome
3 genes
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0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 1 →
Oropharyngeal neoplasms Uveomeningoencephalitic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 1 →
Oropharyngeal neoplasms Pemphigus vulgaris
3 genes
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3 of 3 corroborated by 2+ sources
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 1 →
Bladder cancer Epidermal nevus
3 genes
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3 of 3 corroborated by 2+ sources
FGFR3(4), KRAS(2), HRAS(4)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 18 →
Carney complex Carney-stratakis syndrome
3 genes
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3 of 3 corroborated by 2+ sources
SDHB(5), SDHA(2), SDHC(5)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 81 →
Digenic hemochromatosis Hereditary hemochromatosis
3 genes
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3 of 3 corroborated by 2+ sources
TFR2(2), HFE(2), HAMP(2)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 135 →
Epidermal nevus Penile neoplasms
3 genes
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3 of 3 corroborated by 2+ sources
KRAS(2), HRAS(3), PIK3CA(3)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 18 →
Epilepsy with auditory features Familial temporal lobe epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
RELN(5), LGI1(7), MICAL1(5)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.