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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Delirium Hyperkinesia
4 genes
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4 of 4 corroborated by 2+ sources
DRD2(2), DRD3(2), SLC6A3(2), TH(2)
0.100 0.400 3.64e-9 3.10e-8 ✓ sig. —
Peripheral vertigo Vestibular disease
3 genes
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OTOGL(1), LYAR(1), TMEM128(1)
0.200 0.600 3.61e-9 3.09e-8 ✓ sig. —
Central vertigo Vestibular disease
3 genes
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OTOGL(1), LYAR(1), TMEM128(1)
0.200 0.600 3.61e-9 3.09e-8 ✓ sig. —
Ap-4 deficiency syndrome Spastic paraplegia
4 genes
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4 of 4 corroborated by 2+ sources
AP4M1(4), AP4B1(5), AP4E1(5), AP4S1(5)
0.033 1.000 3.51e-9 3.00e-8 ✓ sig. —
Ap4-related intellectual disability and spastic paraplegia Spastic paraplegia
4 genes
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4 of 4 corroborated by 2+ sources
AP4M1(3), AP4B1(4), AP4E1(4), AP4S1(4)
0.033 1.000 3.51e-9 3.00e-8 ✓ sig. —
Progressive myoclonic epilepsy Unverricht-lundborg syndrome
3 genes
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3 of 3 corroborated by 2+ sources
SCARB2(6), PRICKLE1(7), CSTB(6)
0.120 1.000 3.33e-9 2.85e-8 ✓ sig. Cluster 329 →
Atrial standstill Hereditary atrial fibrillation
3 genes
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3 of 3 corroborated by 2+ sources
NPPA(5), SCN5A(3), GJA5(5)
0.120 1.000 3.33e-9 2.85e-8 ✓ sig. —
Double outlet right ventricle Ventricular septal defect
4 genes
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2 of 4 corroborated by 2+ sources
NKX2-5(3), ISL1(1), MYCN(1), YES1(2)
0.085 0.500 3.32e-9 2.84e-8 ✓ sig. —
Lung disease Pancreatitis
8 genes
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7 of 8 corroborated by 2+ sources
SERPINA1(3), MPO(2), PTGS2(2), PTHLH(2), HGF(2), HTR4(1), ADRB2(3), CFTR(3)
0.053 0.140 3.28e-9 2.81e-8 ✓ sig. —
Diabetic retinopathy Proliferative diabetic retinopathy
8 genes
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2 of 8 corroborated by 2+ sources
NRXN3(1), RBFOX1(1), SERPINE1(1), SERPINF1(1), PPARG(2), HLA-B(2), GOLIM4(1), STUM(1)
0.041 0.222 3.28e-9 2.81e-8 ✓ sig. —
complex neurodevelopmental disorder Houge janssens syndrome
4 genes
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4 of 4 corroborated by 2+ sources
PPP2CA(5), PPP2R5C(2), PPP2R1A(5), PPP2R5D(3)
0.034 1.000 3.28e-9 2.81e-8 ✓ sig. —
Carney complex Paraganglioma
3 genes
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3 of 3 corroborated by 2+ sources
SDHB(4), SDHA(2), SDHC(4)
0.231 0.429 3.22e-9 2.76e-8 ✓ sig. Cluster 81 →
Carney complex Pheochromocytoma/paraganglioma syndrome
3 genes
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3 of 3 corroborated by 2+ sources
SDHB(6), SDHA(6), SDHC(4)
0.231 0.429 3.22e-9 2.76e-8 ✓ sig. Cluster 81 →
Endometrial neoplasms Urinary bladder neoplasms
12 genes
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2 of 12 corroborated by 2+ sources
BPTF(2), ARID1A(1), ESR2(1), ESR1(1), MTHFR(1), AKT1(2), CXCL8(1), CDH1(1), MYC(1), TRPV1(1), EP300(1), CCND1(1)
0.046 0.091 3.21e-9 2.76e-8 ✓ sig. —
Differentiated thyroid carcinoma Nonmedullary thyroid cancer
4 genes
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4 of 4 corroborated by 2+ sources
FOXE1(3), NRAS(3), HRAS(3), NKX2-1(2)
0.075 0.571 3.15e-9 2.70e-8 ✓ sig. —
Epilepsy of infancy with migrating focal seizures genetic developmental and epileptic encephalopathy
4 genes
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4 of 4 corroborated by 2+ sources
SCN1A(2), SLC12A5(3), PLCB1(2), SLC25A22(2)
0.095 0.444 3.14e-9 2.70e-8 ✓ sig. —
genetic developmental and epileptic encephalopathy Malignant migrating partial seizures of infancy
4 genes
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4 of 4 corroborated by 2+ sources
SCN1A(3), SLC12A5(3), PLCB1(3), SLC25A22(3)
0.095 0.444 3.14e-9 2.70e-8 ✓ sig. —
Diabetic angiopathies Uveitis
5 genes
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3 of 5 corroborated by 2+ sources
HLA-DRB1(1), SERPINF1(2), SOD2(2), TNF(1), ALB(2)
0.088 0.179 3.12e-9 2.69e-8 ✓ sig. —
Diabetic peripheral angiopathy Uveitis
5 genes
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3 of 5 corroborated by 2+ sources
HLA-DRB1(1), SERPINF1(2), SOD2(2), TNF(1), ALB(2)
0.088 0.179 3.12e-9 2.69e-8 ✓ sig. —
Erythematosquamous dermatosis Rosacea
4 genes
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HERC2(1), IRF4(1), MC1R(1), SLC45A2(1)
0.121 0.286 3.10e-9 2.67e-8 ✓ sig. —
Hemochromatosis Iron metabolism disorder
4 genes
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4 of 4 corroborated by 2+ sources
BMP2(3), CP(3), HFE(6), FTH1(6)
0.121 0.286 3.10e-9 2.67e-8 ✓ sig. Cluster 135 →
Atrioventricular block Sick sinus syndrome
4 genes
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2 of 4 corroborated by 2+ sources
LMNA(3), TTN(2), SCN10A(1), CCDC141(1)
0.125 0.235 3.08e-9 2.65e-8 ✓ sig. Cluster 4 →
Periodontitis Substance abuse
23 genes
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4 of 23 corroborated by 2+ sources
ACTN2(1), AKAP6(1), CAMTA1(1), CDH13(1), DLG2(1), ERC2(1), FAM135B(1), GRIK1(1), KDM4B(1), NKAIN2(1), RBFOX1(1), ROBO2(1) +11 more
0.035 0.146 2.92e-9 2.52e-8 ✓ sig. —
Bouillaud’s disease Bullous pemphigoid
3 genes
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3 of 3 corroborated by 2+ sources
0.125 1.000 2.91e-9 2.51e-8 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Bullous pemphigoid
3 genes
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3 of 3 corroborated by 2+ sources
0.125 1.000 2.91e-9 2.51e-8 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.