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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bicuspid aortic valve Hereditary bundle branch system defect
2 genes
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1 of 2 corroborated by 2+ sources
DSP(1), NKX2-5(2)
0.100 0.286 1.61e-5 7.71e-5 ✓ sig. —
Bronchial hyperreactivity Extravasation of diagnostic and therapeutic materials
2 genes
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2 of 2 corroborated by 2+ sources
TAC1(2), IL1RN(2)
0.100 0.286 1.61e-5 7.71e-5 ✓ sig. —
Angle closure glaucoma Hepatic veno occlusive disease
2 genes
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MTHFR(1), GSTM1(1)
0.100 0.286 1.61e-5 7.71e-5 ✓ sig. —
Testicular disease Thyroid agenesis
2 genes
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2 of 2 corroborated by 2+ sources
PAX8(2), IGSF1(2)
0.100 0.286 1.61e-5 7.71e-5 ✓ sig. Cluster 88 →
Hepatic encephalopathy Nausea
2 genes
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2 of 2 corroborated by 2+ sources
TNF(2), OPRM1(2)
0.100 0.286 1.61e-5 7.71e-5 ✓ sig. Cluster 57 →
Bonnevie-ullrich syndrome Hyperemia
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), NOS2(2)
0.100 0.286 1.61e-5 7.71e-5 ✓ sig. —
Congenital diaphragmatic hernia Diaphragmatic malformations
2 genes
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2 of 2 corroborated by 2+ sources
ZFPM2(5), PLS3(2)
0.083 0.400 1.60e-5 7.68e-5 ✓ sig. —
Ambiguous genitalia Fraser syndrome
2 genes
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2 of 2 corroborated by 2+ sources
WT1(6), FREM2(6)
0.083 0.400 1.60e-5 7.68e-5 ✓ sig. —
Esophageal adenocarcinoma Hyperlipidemia
5 genes
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1 of 5 corroborated by 2+ sources
ALDH1A2(1), APOB(3), BCL3(1), SLC22A2(1), SLC22A3(1)
0.029 0.143 1.56e-5 7.50e-5 ✓ sig. —
Episodic ataxia Lennox-gastaut syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CACNA1A(6), SCN2A(4)
0.105 0.250 1.55e-5 7.48e-5 ✓ sig. —
Eye neoplasms Prader-willi syndrome
2 genes
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2 of 2 corroborated by 2+ sources
HERC2(5), OCA2(3)
0.105 0.250 1.55e-5 7.48e-5 ✓ sig. Cluster 298 →
Congenital nystagmus Eye neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
OCA2(2), TYR(2)
0.105 0.250 1.55e-5 7.48e-5 ✓ sig. —
Rothmund-thomson syndrome Ruptured abdominal aortic aneurysm
2 genes
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ELN(1), EFEMP2(1)
0.105 0.250 1.55e-5 7.48e-5 ✓ sig. —
Non-organic psychosis Schizoaffective disorder
4 genes
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C9orf72(1), PRKCA(1), SAT1(1), CALR(1)
0.040 0.118 1.55e-5 7.45e-5 ✓ sig. —
Huntington disease Interstitial nephritis
2 genes
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2 of 2 corroborated by 2+ sources
FAN1(4), MTMR10(2)
0.032 1.000 1.54e-5 7.43e-5 ✓ sig. —
Dementia in huntington’s disease Huntington disease
2 genes
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2 of 2 corroborated by 2+ sources
PRNP(6), JPH3(6)
0.032 1.000 1.54e-5 7.43e-5 ✓ sig. —
Congenital disorder of glycosylation Desbuquois syndrome
14 genes
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14 of 14 corroborated by 2+ sources
ALG12(4), ALG3(4), ALG9(4), ATP6V0A2(2), FAM20B(3), SLC35C1(3), XYLT1(3), GALNT2(6), CEP290(2), B3GALT6(3), TMEM165(4), COG1(7) +2 more
0.021 0.141 1.53e-5 7.36e-5 ✓ sig. —
Curling ulcer Diffuse gastric adenocarcinoma
2 genes
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2 of 2 corroborated by 2+ sources
ABO(2), PSCA(2)
0.095 0.333 1.51e-5 7.30e-5 ✓ sig. Cluster 265 →
Contracture of multiple joints Hydrops fetalis
2 genes
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MYO18A(1), FLVCR2(1)
0.095 0.333 1.51e-5 7.30e-5 ✓ sig. —
Urination disorders Ventricular remodeling
2 genes
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2 of 2 corroborated by 2+ sources
NOS1(2), NPPA(2)
0.071 0.500 1.52e-5 7.30e-5 ✓ sig. —
Gallbladder neoplasms Penile neoplasms
2 genes
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TP53(1), KRAS(1)
0.071 0.500 1.52e-5 7.30e-5 ✓ sig. —
Large artery stroke Moyamoya disease
5 genes
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1 of 5 corroborated by 2+ sources
HDAC9(1), LRP1(1), TWIST1(1), PHACTR1(2), FLT1(1)
0.037 0.081 1.51e-5 7.29e-5 ✓ sig. —
Geleophysic dysplasia Growth disorder
2 genes
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2 of 2 corroborated by 2+ sources
LTBP3(6), ADAMTSL2(5)
0.054 0.667 1.50e-5 7.25e-5 ✓ sig. —
Bouillaud’s disease Diabetic ketoacidosis
2 genes
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2 of 2 corroborated by 2+ sources
0.054 0.667 1.50e-5 7.25e-5 ✓ sig. —
Interstitial cystitis Ocular sarcoidosis
4 genes
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0.042 0.100 1.50e-5 7.22e-5 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.