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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Sick sinus syndrome Wolff-parkinson-white syndrome
7 genes
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4 of 7 corroborated by 2+ sources
PITX2(2), MYH6(3), LMNA(1), SCN5A(6), TTN(2), ANK2(1), SNTA1(1)
0.111 0.389 8.81e-14 1.15e-12 ✓ sig. Cluster 4 →
Deafness, x-linked X-linked nonsyndromic hearing loss
4 genes
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4 of 4 corroborated by 2+ sources
PRPS1(4), POU3F4(2), SMPX(4), COL4A6(4)
0.364 1.000 8.97e-14 1.16e-12 ✓ sig. —
Erythrokeratodermia variabilis Greither disease
4 genes
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4 of 4 corroborated by 2+ sources
GJA1(5), GJB3(7), PERP(4), GJB4(6)
0.364 1.000 8.97e-14 1.16e-12 ✓ sig. Cluster 92 →
Congenital malformation syndromes predominantly affecting facial appearance Goldenhar syndrome
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.364 1.000 8.97e-14 1.16e-12 ✓ sig. Cluster 48 →
Goldenhar syndrome Warburg micro syndrome
4 genes
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4 of 4 corroborated by 2+ sources
RAB18(6), RAB3GAP1(5), RAB3GAP2(5), TBC1D20(5)
0.364 1.000 8.97e-14 1.16e-12 ✓ sig. Cluster 48 →
Carbohydrate metabolism disease Intestinal disaccharide malabsorption
4 genes
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HK1(1), GCK(1), G6PC2(1), SPC25(1)
0.364 1.000 8.97e-14 1.16e-12 ✓ sig. —
Mesothelioma Ovarian neoplasms
16 genes
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TP53(1), EGFR(1), SOD2(1), IL6(1), CTNNB1(1), CXCL8(1), MET(1), CDH1(1), SLC2A1(1), NME2(1), BAP1(1), FGF1(1) +4 more
0.061 0.122 9.07e-14 1.17e-12 ✓ sig. Cluster 5 →
Cone-rod dystrophy Retinal degeneration
9 genes
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9 of 9 corroborated by 2+ sources
PDE6B(2), CRX(8), RPE65(2), NMNAT1(3), RHO(2), RPGR(4), RAX2(5), UBAP1L(3), RDH12(2)
0.087 0.243 9.24e-14 1.20e-12 ✓ sig. Cluster 7 →
Congenital cartilage disorder Stickler syndrome
6 genes
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5 of 6 corroborated by 2+ sources
COL2A1(7), COL11A1(6), COL11A2(1), COL9A1(8), COL9A2(7), COL9A3(7)
0.154 0.429 9.54e-14 1.23e-12 ✓ sig. —
Oral cavity carcinoma Oropharyngeal cancer
8 genes
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LAMC3(1), TFAP2A(1), HLA-DQB1(1), HLA-B(1), DYSF(1), ADH1B(1), ABTB3(1), TRIM5(1)
0.099 0.286 9.57e-14 1.24e-12 ✓ sig. —
Berardinelli-seip congenital lipodystrophy Congenital generalized lipodystrophy
4 genes
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4 of 4 corroborated by 2+ sources
CAV1(4), BSCL2(4), CAVIN1(4), AGPAT2(5)
0.444 0.667 9.61e-14 1.24e-12 ✓ sig. Cluster 71 →
Microphthalmos Nanophthalmos
6 genes
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6 of 6 corroborated by 2+ sources
PRSS56(3), SOX2(2), OTX2(2), RAX(2), ALDH1A3(2), MFRP(6)
0.140 0.500 9.63e-14 1.24e-12 ✓ sig. Cluster 56 →
Differentiated thyroid carcinoma Thyroid cancer
8 genes
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2 of 8 corroborated by 2+ sources
TERT(2), FOXE1(2), TRMO(1), NRG1(1), SLK(1), STN1(1), MBIP(1), PCNX2(1)
0.105 0.235 9.84e-14 1.27e-12 ✓ sig. Cluster 130 →
Cortical development malformation Microcephaly
9 genes
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8 of 9 corroborated by 2+ sources
TUBG1(2), DYNC1H1(2), AKT3(3), TBCD(2), WDR62(6), KIF5C(2), TUBA1A(1), KIFBP(2), KIF2A(2)
0.072 0.333 1.04e-13 1.34e-12 ✓ sig. —
Glioblastoma Obesity
101 genes
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18 of 101 corroborated by 2+ sources
RUNX1(2), ARHGAP24(1), ARHGEF28(1), C6orf118(1), CCDC33(1), CDH4(1), CDKAL1(2), CSMD1(1), CTNNA3(1), DCC(1), DDX18(1), DGKI(1) +89 more
0.059 0.166 1.08e-13 1.39e-12 ✓ sig. —
Cognition disorder Memory disorders
9 genes
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9 of 9 corroborated by 2+ sources
COMT(2), APP(2), PSEN1(2), IGF2(2), MAPT(2), DRD2(2), SLC6A4(2), CNR1(2), HTR2A(2)
0.093 0.176 1.08e-13 1.39e-12 ✓ sig. —
Premature ovarian failure Spermatogenic failure
14 genes
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13 of 14 corroborated by 2+ sources
NR5A1(5), STAG3(5), XRCC2(4), C14orf39(4), MSH5(5), FANCM(4), DNAH6(3), SPATA22(2), BRDT(4), FAHD1(1), KASH5(3), MEIOB(4) +2 more
0.065 0.123 1.11e-13 1.42e-12 ✓ sig. Cluster 31 →
genetic developmental and epileptic encephalopathy Rolandic epilepsy
8 genes
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8 of 8 corroborated by 2+ sources
WWOX(2), SZT2(2), SCN1A(2), SCN1B(2), KCNQ3(2), CSTB(2), PLCB1(2), SPTAN1(2)
0.105 0.222 1.14e-13 1.47e-12 ✓ sig. —
Congenital neutropenia Neutropenia
7 genes
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2 of 7 corroborated by 2+ sources
CLPB(1), CSF3R(1), ELANE(3), SRP19(1), SEC61A1(1), JAGN1(3), SRP68(1)
0.103 0.412 1.23e-13 1.58e-12 ✓ sig. Cluster 209 →
Glioblastoma Major depressive disorder
142 genes
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45 of 142 corroborated by 2+ sources
PAFAH1B1(1), HNF1B(2), TERT(2), DOCK6(1), ANK3(1), ANO4(1), C6orf118(1), CACNA2D3(1), CDH19(1), CDH4(1), CDKAL1(1), CSMD1(1) +130 more
0.059 0.234 1.23e-13 1.58e-12 ✓ sig. —
Conduction disorder of the heart Hereditary bundle branch system defect
5 genes
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TRPM4(1), DSP(1), CASQ2(1), SCN5A(1), SCN1B(1)
0.185 0.714 1.24e-13 1.59e-12 ✓ sig. Cluster 4 →
Lung neoplasms Renal cell carcinoma
20 genes
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1 of 20 corroborated by 2+ sources
HNF1B(1), PTEN(1), TP53(1), GSTP1(1), GSTT1(1), IL6(1), GSTM1(1), GPX1(1), DNMT3A(1), DAPK1(1), MET(5), ERBB2(1) +8 more
0.053 0.144 1.30e-13 1.67e-12 ✓ sig. Cluster 5 →
Discordant ventriculoarterial connection Transposition of the great arteries
4 genes
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1 of 4 corroborated by 2+ sources
MTHFR(1), SLC19A1(1), MED13L(1), GDF1(2)
0.333 1.000 1.41e-13 1.81e-12 ✓ sig. Cluster 113 →
Bone neoplasms Connective tissue neoplasm
5 genes
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LRP1B(1), KIF13A(1), THSD7B(1), C10orf143(1), USP20(1)
0.200 0.625 1.58e-13 2.02e-12 ✓ sig. —
Osteochondrodysplasias Stickler syndrome
6 genes
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5 of 6 corroborated by 2+ sources
COL2A1(7), COL11A1(6), COL11A2(1), COL9A1(8), COL9A2(7), COL9A3(7)
0.143 0.429 1.78e-13 2.28e-12 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.