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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Genetic steroid-resistant nephrotic syndrome Nephrotic syndrome
29 genes
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20 of 29 corroborated by 2+ sources
WT1(4), NUP107(4), COL4A3(1), ACTN4(1), ARHGAP24(1), FAT1(1), MYO1E(1), NUP160(5), NUP85(3), PAX2(1), PTPRO(4), TRPC6(1) +17 more
0.169 0.853 1.80e-53 9.96e-52 ✓ sig. Cluster 24 →
Melanoma Skin neoplasms
59 genes
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15 of 59 corroborated by 2+ sources
NOTCH2(2), TERT(5), TP53(2), TPCN2(1), ASIP(2), BNC2(1), ERBB4(1), FOXP1(1), HERC2(1), HLA-DQA1(1), HLA-DRB1(1), ICOS(1) +47 more
0.113 0.407 2.16e-53 1.19e-51 ✓ sig. Cluster 23 →
Cancer Diabetes mellitus
64 genes
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5 of 64 corroborated by 2+ sources
HNF1B(2), RREB1(1), ANKRD26(1), ALDH1A2(1), ANKRD31(1), APOB(1), APOC1(1), ASIP(2), BAZ1B(1), BCL3(1), EBF1(1), FADS1(1) +52 more
0.130 0.245 4.27e-53 2.35e-51 ✓ sig. —
Congenital hypoplasia of part of brain Hydranencephaly
17 genes
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CASK(1), ARL3(1), TMEM216(1), TMEM237(1), SEPSECS(1), KIAA0586(1), KIAA0753(1), CHMP1A(1), IFT74(1), TUBB3(1), AMPD2(1), INPP5E(1) +5 more
0.739 1.000 6.15e-53 3.36e-51 ✓ sig. Cluster 109 →
Congenital brain malformation Hydranencephaly
17 genes
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CASK(1), ARL3(1), TMEM216(1), TMEM237(1), SEPSECS(1), KIAA0586(1), KIAA0753(1), CHMP1A(1), IFT74(1), TUBB3(1), AMPD2(1), INPP5E(1) +5 more
0.739 1.000 6.15e-53 3.36e-51 ✓ sig. Cluster 109 →
Hydranencephaly Microgyria
17 genes
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CASK(1), ARL3(1), TMEM216(1), TMEM237(1), SEPSECS(1), KIAA0586(1), KIAA0753(1), CHMP1A(1), IFT74(1), TUBB3(1), AMPD2(1), INPP5E(1) +5 more
0.739 1.000 6.15e-53 3.36e-51 ✓ sig. Cluster 109 →
Intellectual developmental disorder, x-linked X-linked complex neurodevelopmental disorder
26 genes
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26 of 26 corroborated by 2+ sources
FRMPD4(6), NLGN4X(2), GRIA3(5), ARX(6), THOC2(4), PTCHD1(2), CNKSR2(6), AP1S2(3), IL1RAPL1(5), SYN1(5), FTSJ1(6), IQSEC2(6) +14 more
0.263 0.743 7.74e-53 4.22e-51 ✓ sig. Cluster 113 →
Developmental disability Intellectual developmental disorder
71 genes
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37 of 71 corroborated by 2+ sources
CHD8(3), UBE3A(1), ANKRD11(1), RAI1(2), SHANK3(2), PTEN(2), ADNP(1), ATRX(1), ARID1B(1), AUTS2(3), DEAF1(3), FBXO11(1) +59 more
0.081 0.497 1.57e-52 8.52e-51 ✓ sig. Cluster 5 →
Non-hodgkins lymphoma Non-melanoma skin carcinoma
43 genes
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ANKRD11(1), TP53(1), ASIP(1), BNC2(1), EPB41L1(1), FARP1(1), FOXP1(1), HLA-DQA1(1), HLA-DQB3(1), HLA-DRB1(1), OR5V1(1), RHOU(1) +31 more
0.164 0.319 2.83e-52 1.53e-50 ✓ sig. —
Obesity Schizophrenia
402 genes
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185 of 402 corroborated by 2+ sources
SOX5(2), RAI1(3), DPYD(3), RERE(1), COMT(3), CUL9(1), WWOX(2), PDE4D(2), RBPJ(1), ABCA1(1), ABT1(1), ADGRL2(1) +390 more
0.121 0.337 3.19e-52 1.73e-50 ✓ sig. Cluster 2 →
Breast neoplasms Prostatic neoplasms
113 genes
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3 of 113 corroborated by 2+ sources
CYP17A1(1), COMT(1), MAP3K1(1), PTEN(1), CHEK2(2), TERT(1), TP53(1), AKT2(1), ARID1A(1), ATP7B(1), CST6(1), EGFR(1) +101 more
0.110 0.219 8.25e-52 4.45e-50 ✓ sig. Cluster 21 →
Septopreoptic holoprosencephaly Syntelencephaly
15 genes
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15 of 15 corroborated by 2+ sources
FGF8(2), CDON(2), GLI2(2), SHH(2), PTCH1(2), SIX3(2), GAS1(2), ZIC2(2), DLL1(2), STIL(2), DISP1(2), CRIPTO(2) +3 more
0.938 1.000 2.03e-51 1.09e-49 ✓ sig. Cluster 96 →
Leber congenital amaurosis Optic atrophy
36 genes
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11 of 36 corroborated by 2+ sources
ABCA4(1), CNGB3(1), PRPH2(2), ALMS1(1), NBAS(1), NPHP4(1), USH2A(1), CRB1(6), GUCY2D(6), LCA5(7), PROM1(1), RP1(1) +24 more
0.165 0.500 2.66e-51 1.43e-49 ✓ sig. Cluster 7 →
Cone-rod dystrophy Macular dystrophy
26 genes
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15 of 26 corroborated by 2+ sources
ABCA4(7), ATF6(3), CNGA3(3), CNGB3(1), IMPG1(3), IMPG2(2), PRPH2(5), CACNA1F(2), PDE6B(1), USH2A(1), CRB1(1), CRX(8) +14 more
0.280 0.591 3.55e-51 1.90e-49 ✓ sig. Cluster 7 →
Alzheimer disease Schizophrenia
624 genes
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235 of 624 corroborated by 2+ sources
HMGA2(1), CHRNA7(1), HNF1B(1), KANSL1(1), NFIX(1), HSPG2(2), RERE(1), ARVCF(2), WWOX(2), ZFPM2(1), NCSTN(1), PDE4D(2) +612 more
0.151 0.281 4.24e-51 2.26e-49 ✓ sig. Cluster 2 →
Atrial flutter Cardiac arrhythmia
32 genes
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5 of 32 corroborated by 2+ sources
PRRX1(1), AKAP6(1), ESR2(3), GORAB(1), KCNN3(1), MAPT(1), TBX5(1), CAV1(1), AOPEP(1), FAM13B(1), FGF5(1), LRMDA(1) +20 more
0.216 0.395 5.29e-51 2.82e-49 ✓ sig. Cluster 3 →
Cone dystrophy Cone-rod dystrophy
25 genes
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17 of 25 corroborated by 2+ sources
ABCA4(7), CNGA3(3), CNGB3(3), PDE6C(7), PRPH2(4), CACNA1F(2), PDE6B(1), USH2A(1), CRB1(1), GUCY2D(5), RPGRIP1(6), NMNAT1(2) +13 more
0.284 0.658 5.94e-51 3.15e-49 ✓ sig. Cluster 7 →
Insomnia Substance abuse
145 genes
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7 of 145 corroborated by 2+ sources
SOX5(1), BPTF(1), PER2(2), CACNA1D(1), ALMS1(1), AFF3(1), AKAP6(1), ARHGAP15(1), AUTS2(1), BNC2(1), CADM2(1), CAMTA1(1) +133 more
0.100 0.281 8.92e-51 4.73e-49 ✓ sig. Cluster 2 →
Attention deficit hyperactivity disorder Neurotic disorder
134 genes
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10 of 134 corroborated by 2+ sources
SOX5(1), RERE(1), GBE1(1), ARHGAP15(1), AS3MT(3), BNC2(1), CADM2(1), CAMTA1(1), CELF2(1), CELF4(1), CSMD1(1), CTNNA3(1) +122 more
0.095 0.308 9.15e-51 4.84e-49 ✓ sig. Cluster 2 →
Hereditary steroid-resistant nephrotic syndrome Nephrotic syndrome
28 genes
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28 of 28 corroborated by 2+ sources
WT1(5), NUP107(5), COL4A3(2), ACTN4(2), ARHGAP24(2), MYO1E(2), NUP160(6), NUP85(4), PAX2(2), PTPRO(5), TRPC6(2), PLCE1(7) +16 more
0.162 0.824 9.60e-51 5.06e-49 ✓ sig. Cluster 24 →
Autism Neurodevelopmental disorder
241 genes
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206 of 241 corroborated by 2+ sources
CHD8(4), FOXG1(2), UBE3A(2), CHRNA7(3), SIN3A(2), ANKRD11(2), RAI1(2), NFIX(2), NFIA(2), RERE(6), SPEN(2), JMJD1C(3) +229 more
0.112 0.257 1.06e-50 5.60e-49 ✓ sig. —
Atrial flutter Cardioembolic stroke
32 genes
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PRRX1(1), ESR2(1), GORAB(1), KCNN3(1), TBX5(1), TNFSF12-TNFSF13(1), CAV1(1), KCNJ5(1), AOPEP(1), FAM13B(1), FGF5(1), LRMDA(1) +20 more
0.212 0.395 1.67e-50 8.75e-49 ✓ sig. —
Cardiovascular disease Myocardial ischemia
83 genes
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59 of 83 corroborated by 2+ sources
PRDM16(2), SH2B3(2), ABCG8(2), ACE(3), AGT(3), APOB(3), APOE(3), CDH13(1), DDAH1(1), HDAC9(1), KCNE2(2), LDLR(2) +71 more
0.112 0.212 1.05e-49 5.49e-48 ✓ sig. Cluster 6 →
Congenital hypoplasia of part of brain Macrogyria
17 genes
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CASK(1), ARL3(1), TMEM216(1), TMEM237(1), SEPSECS(1), KIAA0586(1), KIAA0753(1), CHMP1A(1), IFT74(1), TUBB3(1), AMPD2(1), INPP5E(1) +5 more
0.567 1.000 1.21e-49 6.29e-48 ✓ sig. Cluster 109 →
Congenital brain malformation Macrogyria
17 genes
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CASK(1), ARL3(1), TMEM216(1), TMEM237(1), SEPSECS(1), KIAA0586(1), KIAA0753(1), CHMP1A(1), IFT74(1), TUBB3(1), AMPD2(1), INPP5E(1) +5 more
0.567 1.000 1.21e-49 6.29e-48 ✓ sig. Cluster 109 →

Showing 25 of 20825 pairs, sorted by significance (ascending). Click a column header to sort.