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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Atrioventricular septal defect Partial atrioventricular canal defect
2 genes
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2 of 2 corroborated by 2+ sources
GATA4(5), CRELD1(6)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. Cluster 60 →
Retinal degeneration Stargardt disease
4 genes
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4 of 4 corroborated by 2+ sources
CRX(2), RPE65(2), RHO(2), RDH12(2)
0.065 0.143 5.54e-7 3.41e-6 ✓ sig. Cluster 7 →
Distal muscular dystrophy Neuromuscular disease
3 genes
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LDB3(1), MYH7(1), TTN(1)
0.067 0.429 5.64e-7 3.45e-6 ✓ sig. —
Delirium Hepatolenticular degeneration
3 genes
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3 of 3 corroborated by 2+ sources
APOE(3), IL6(2), CXCL8(2)
0.086 0.300 5.72e-7 3.50e-6 ✓ sig. Cluster 76 →
Endometrial hyperplasia Sezary syndrome
3 genes
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3 of 3 corroborated by 2+ sources
PTEN(2), TP53(2), CDKN2A(2)
0.086 0.300 5.72e-7 3.50e-6 ✓ sig. Cluster 3 →
Cerebral hemorrhage Learning disorders
4 genes
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4 of 4 corroborated by 2+ sources
APP(2), VEGFA(2), BCL2(2), HMOX1(2)
0.065 0.138 5.73e-7 3.50e-6 ✓ sig. —
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Macrogyria
4 genes
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CASK(1), SEPSECS(1), KIAA0586(1), TUBA1A(1)
0.065 0.138 5.73e-7 3.50e-6 ✓ sig. Cluster 110 →
Kidney neoplasms Mouth neoplasms
5 genes
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ATP7B(1), SOD2(1), PTGS2(1), NDRG1(1), TSC2(1)
0.051 0.125 5.75e-7 3.51e-6 ✓ sig. Cluster 5 →
Contact dermatitis Lung disease
7 genes
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7 of 7 corroborated by 2+ sources
VEGFA(2), GSTP1(2), CCN2(2), IL18(2), DEFB1(2), NQO1(2), MMP8(2)
0.041 0.093 5.83e-7 3.56e-6 ✓ sig. —
Melas syndrome Mitochondrial myopathy
3 genes
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3 of 3 corroborated by 2+ sources
IL1A(2), IL1B(2), CYTB(2)
0.097 0.200 6.05e-7 3.69e-6 ✓ sig. Cluster 32 →
Hypohidrotic ectodermal dysplasia Tooth agenesis
3 genes
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3 of 3 corroborated by 2+ sources
LRP6(6), WNT10A(7), EDARADD(3)
0.065 0.429 6.09e-7 3.71e-6 ✓ sig. —
Dermatomyositis Irritant dermatitis
3 genes
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3 of 3 corroborated by 2+ sources
C2(2), HLA-DPB1(3), HLA-DPA1(3)
0.079 0.333 6.16e-7 3.76e-6 ✓ sig. Cluster 25 →
Charcot-marie-tooth disease Navajo neurohepatopathy
3 genes
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1 of 3 corroborated by 2+ sources
UCN(1), MPV17(6), TRIM54(1)
0.023 1.000 6.16e-7 3.76e-6 ✓ sig. —
Brain neoplasms Diabetic angiopathies
4 genes
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4 of 4 corroborated by 2+ sources
VEGFA(2), PON1(2), SOD2(2), RELA(2)
0.063 0.143 6.19e-7 3.77e-6 ✓ sig. —
Congenital fibrosis of extraocular muscles Cortical dysplasia with other brain malformations
3 genes
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3 of 3 corroborated by 2+ sources
TUBB(3), TUBB3(5), TUBB2B(5)
0.097 0.188 6.20e-7 3.78e-6 ✓ sig. Cluster 176 →
Aplasia of the vermis Dandy-walker syndrome
4 genes
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HYLS1(1), PIBF1(1), CSPP1(1), ARMC9(1)
0.056 0.200 6.28e-7 3.82e-6 ✓ sig. Cluster 8 →
Fuchs endothelial dystrophy Hereditary corneal dystrophy
3 genes
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3 of 3 corroborated by 2+ sources
COL8A2(3), ZEB1(3), SLC4A11(3)
0.091 0.250 6.35e-7 3.87e-6 ✓ sig. Cluster 75 →
Sickle cell anemia Spherocytosis
3 genes
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3 of 3 corroborated by 2+ sources
CAD(2), UMPS(2), DHODH(2)
0.083 0.300 6.41e-7 3.90e-6 ✓ sig. —
Clonal hematopoiesis Myelodysplastic syndrome
5 genes
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3 of 5 corroborated by 2+ sources
GATA2(4), RUNX1(2), TERT(1), JAK2(1), DLK1(2)
0.051 0.109 6.49e-7 3.95e-6 ✓ sig. Cluster 53 →
Branchiootic syndrome Congenital abnormalities
2 genes
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2 of 2 corroborated by 2+ sources
EYA1(6), SIX1(6)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. Cluster 145 →
Congenital amegakaryocytic thrombocytopenia Essential thrombocythemia
2 genes
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2 of 2 corroborated by 2+ sources
MPL(6), THPO(5)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. Cluster 53 →
Congenital cardiomyopathy Neuropathy, ataxia, and retinitis pigmentosa
2 genes
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ND5(1), ND4(1)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. Cluster 32 →
Amegakaryocytic thrombocytopenia Essential thrombocythemia
2 genes
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2 of 2 corroborated by 2+ sources
MPL(3), THPO(3)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. Cluster 53 →
Benign recurrent intrahepatic cholestasis Progressive intrahepatic cholestasis
2 genes
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2 of 2 corroborated by 2+ sources
ATP8B1(4), ABCB11(4)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. Cluster 319 →
Deafness, sensorineural, autosomal-mitochondrial type Neuropathy, ataxia, and retinitis pigmentosa
2 genes
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1 of 2 corroborated by 2+ sources
ND1(1), COX1(2)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.