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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Eye neoplasms Oculocutaneous albinism
3 genes
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3 of 3 corroborated by 2+ sources
OCA2(7), TYR(6), SLC24A5(4)
0.130 0.250 1.03e-7 7.19e-7 ✓ sig. Cluster 298 →
Cachexia Hypercalcemia
3 genes
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3 of 3 corroborated by 2+ sources
TNF(2), IL6(2), PTHLH(2)
0.130 0.250 1.03e-7 7.19e-7 ✓ sig. —
Congenital pes cavus Sensory neuropathy
3 genes
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MPZ(1), GDAP1(1), GJB1(1)
0.130 0.250 1.03e-7 7.19e-7 ✓ sig. —
Intracranial hemorrhage Thromboembolism
3 genes
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PLAU(1), PLAT(1), F7(1)
0.130 0.250 1.03e-7 7.19e-7 ✓ sig. —
Cryptorchidism Penile hypospadia
3 genes
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HOXD13(1), LSM1(1), NIPBL(1)
0.115 0.375 1.05e-7 7.30e-7 ✓ sig. Cluster 103 →
Non-hodgkins lymphoma Peptic ulcer disease
10 genes
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1 of 10 corroborated by 2+ sources
FOXP1(1), HLA-DQA1(1), HLA-DQB3(1), HLA-DRA(1), HLA-DRB1(2), MECOM(1), TTC33(1), JRK(1), PSCA(1), LY6K(1)
0.040 0.083 1.06e-7 7.42e-7 ✓ sig. —
Cervical intraepithelial neoplasia Oral cavity carcinoma
3 genes
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HLA-DQB1(1), HLA-B(1), CLPTM1L(1)
0.094 0.500 1.07e-7 7.48e-7 ✓ sig. Cluster 1 →
Diabetic angiopathies Pancreatic diseases
3 genes
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3 of 3 corroborated by 2+ sources
AGER(2), HMOX1(2), ALB(2)
0.094 0.500 1.07e-7 7.48e-7 ✓ sig. —
Diabetic peripheral angiopathy Pancreatic diseases
3 genes
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3 of 3 corroborated by 2+ sources
AGER(2), HMOX1(2), ALB(2)
0.094 0.500 1.07e-7 7.48e-7 ✓ sig. —
Emphysema Obstructive airway disease
6 genes
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6 of 6 corroborated by 2+ sources
TP53(2), SERPINA1(3), NOS2(2), CHRNA5(2), TNFRSF8(2), HDAC2(2)
0.046 0.167 1.07e-7 7.48e-7 ✓ sig. Cluster 119 →
Myocardial ischemia Periodontitis
18 genes
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14 of 18 corroborated by 2+ sources
CDH2(3), ABCA1(2), CDH13(1), KALRN(2), TCF7L2(3), TENM2(1), IL6(2), GSTM1(1), FTO(2), GDF15(3), DAB2IP(2), MMP9(2) +6 more
0.034 0.114 1.09e-7 7.59e-7 ✓ sig. —
Hematologic disease Polycythemia vera
3 genes
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1 of 3 corroborated by 2+ sources
H2BC4(1), H1-2(1), JAK2(4)
0.120 0.333 1.12e-7 7.81e-7 ✓ sig. —
Cardiac conduction disease Sick sinus syndrome
3 genes
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2 of 3 corroborated by 2+ sources
MYH6(3), LMNA(1), SCN5A(6)
0.120 0.333 1.12e-7 7.81e-7 ✓ sig. Cluster 4 →
Kidney neoplasms Thyroid neoplasms
5 genes
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BRAF(1), MAPK1(1), PTGS2(1), CCND1(1), SLC5A5(1)
0.061 0.125 1.16e-7 8.06e-7 ✓ sig. Cluster 5 →
Dermatomyositis Diffuse cutaneous systemic sclerosis
4 genes
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1 of 4 corroborated by 2+ sources
HLA-DPB1(1), STAT4(1), HLA-DPA1(1), TGFBR1(2)
0.078 0.174 1.16e-7 8.06e-7 ✓ sig. Cluster 25 →
Nasal disorder Pharyngeal disorder
4 genes
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NEK6(1), IL7R(1), FBXO33(1), GAS2L2(1)
0.078 0.174 1.16e-7 8.06e-7 ✓ sig. Cluster 137 →
Hereditary atrial fibrillation Hereditary bundle branch system defect
3 genes
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3 of 3 corroborated by 2+ sources
NKX2-5(2), SCN5A(2), SCN1B(2)
0.103 0.429 1.16e-7 8.07e-7 ✓ sig. Cluster 4 →
Gross motor development delay Neuromuscular disease
4 genes
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SCN4A(1), RYR1(1), MYH7(1), TTN(1)
0.073 0.222 1.16e-7 8.09e-7 ✓ sig. —
Gastrointestinal neoplasms Medulloblastoma
3 genes
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APC(1), ERBB2(1), HIC1(1)
0.059 0.750 1.21e-7 8.40e-7 ✓ sig. Cluster 41 →
Gorlin syndrome Medulloblastoma
3 genes
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3 of 3 corroborated by 2+ sources
PTCH1(3), SUFU(5), PTCH2(4)
0.059 0.750 1.21e-7 8.40e-7 ✓ sig. —
Graft-versus-host disease Mucositis
3 genes
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3 of 3 corroborated by 2+ sources
IL10(3), MTHFR(2), IL1RN(2)
0.111 0.375 1.22e-7 8.47e-7 ✓ sig. —
Amenorrhea Congenital adrenal hyperplasia
3 genes
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3 of 3 corroborated by 2+ sources
CYP17A1(3), CYP19A1(2), POR(5)
0.125 0.273 1.23e-7 8.53e-7 ✓ sig. Cluster 346 →
Ischemic heart disease Preeclampsia
10 genes
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10 of 10 corroborated by 2+ sources
ACE(2), SERPINE1(2), NOS3(2), HMOX1(2), MTHFR(2), FTO(2), FURIN(2), EDN1(2), CLCN6(2), DDAH2(2)
0.039 0.102 1.25e-7 8.69e-7 ✓ sig. Cluster 139 →
Polycystic kidney disease with tuberous sclerosis Tuberous sclerosis complex
2 genes
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2 of 2 corroborated by 2+ sources
PKD1(2), TSC2(7)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 70 →
Polycystic kidneys, severe infantile with tuberous sclerosis Tuberous sclerosis complex
2 genes
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1 of 2 corroborated by 2+ sources
PKD1(1), TSC2(7)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 70 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.