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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Breast neoplasms Colorectal neoplasms
73 genes
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1 of 73 corroborated by 2+ sources
DPYD(1), BMP2(1), COL7A1(1), CHEK2(2), TP53(1), ABCA8(1), ARID1A(1), ATP7B(1), EGFR(1), ESR2(1), EXO1(1), GPX4(1) +61 more
0.099 0.251 2.04e-43 9.19e-42 ✓ sig. Cluster 5 →
Respiratory system disease Ulcerative colitis
72 genes
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8 of 72 corroborated by 2+ sources
CEBPA(1), RTEL1(1), CCR7(1), EMSY(1), ETS1(1), FADS1(1), FADS2(1), HINT1(1), HLA-DQA1(1), HLA-DRB1(3), IKZF1(3), IL6R(1) +60 more
0.092 0.299 1.77e-43 7.97e-42 ✓ sig. —
Charcot-marie-tooth disease Peripheral neuropathy
39 genes
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33 of 39 corroborated by 2+ sources
DHTKD1(5), AARS1(7), SLC12A6(4), HINT1(4), MME(8), SBF2(7), NGF(1), DCTN1(2), DYNC1H1(5), KIF5A(4), MFN2(7), NEFH(5) +27 more
0.136 0.295 1.73e-43 7.81e-42 ✓ sig. —
Dentin dysplasia Dentinogenesis imperfecta
14 genes
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1 of 14 corroborated by 2+ sources
SLC24A4(1), AMBN(1), AMELX(1), DLX3(1), ENAM(1), FAM20A(1), FAM83H(1), ITGB6(1), KLK4(1), LAMB3(1), MMP20(1), ODAPH(1) +2 more
0.700 0.875 1.70e-43 7.68e-42 ✓ sig. Cluster 366 →
Holoprosencephaly Syntelencephaly
15 genes
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15 of 15 corroborated by 2+ sources
FGF8(3), CDON(6), GLI2(6), SHH(5), PTCH1(7), SIX3(6), GAS1(5), ZIC2(6), DLL1(3), STIL(3), DISP1(4), CRIPTO(4) +3 more
0.500 1.000 1.57e-43 7.14e-42 ✓ sig. Cluster 96 →
Holoprosencephaly Septopreoptic holoprosencephaly
15 genes
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15 of 15 corroborated by 2+ sources
FGF8(3), CDON(6), GLI2(6), SHH(5), PTCH1(7), SIX3(6), GAS1(5), ZIC2(6), DLL1(3), STIL(3), DISP1(4), CRIPTO(4) +3 more
0.500 1.000 1.57e-43 7.14e-42 ✓ sig. Cluster 96 →
Brugada syndrome Long qt syndrome
27 genes
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22 of 27 corroborated by 2+ sources
CACNB2(6), PKP2(4), SLMAP(4), TBX5(3), TRPM4(4), DSP(1), KCNJ2(2), CACNA1C(7), KCNH2(7), KCNQ1(7), RYR2(1), SCN5A(8) +15 more
0.194 0.429 1.42e-43 6.47e-42 ✓ sig. Cluster 4 →
Aplasia of the vermis Ciliopathy
24 genes
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23 of 24 corroborated by 2+ sources
WDPCP(3), CC2D2A(3), RPGRIP1L(3), TMEM67(3), SUFU(3), TMEM138(3), TMEM216(3), TMEM231(3), CEP120(3), IFT172(3), CEP41(2), IFT74(3) +12 more
0.235 0.444 1.36e-43 6.22e-42 ✓ sig. Cluster 8 →
Cytochrome c oxidase deficiency Mitochondrial complex deficiency
20 genes
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20 of 20 corroborated by 2+ sources
COX5A(5), LRPPRC(2), SCO2(5), SCO1(6), COA3(4), COA5(3), COA6(3), COX15(5), SURF1(5), COX14(5), FASTKD2(3), PET100(5) +8 more
0.167 1.000 1.08e-43 4.93e-42 ✓ sig. Cluster 50 →
Dilated cardiomyopathy Long qt syndrome
40 genes
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28 of 40 corroborated by 2+ sources
BRAF(1), CACNB2(1), CTNNA3(1), DSG2(7), JUP(1), KCNE2(7), PKP2(2), RBM20(8), TBX5(2), TRPM4(1), DSP(7), DPP6(1) +28 more
0.119 0.392 6.85e-44 3.14e-42 ✓ sig. —
Bipolar disorder Obesity
238 genes
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100 of 238 corroborated by 2+ sources
SOX5(1), RERE(1), COMT(2), INS(2), WWOX(1), AGT(1), AKAP6(1), APOE(3), AS3MT(1), AUTS2(1), C6orf118(1), C8orf90(1) +226 more
0.109 0.199 6.84e-44 3.14e-42 ✓ sig. Cluster 2 →
X-linked complex neurodevelopmental disorder X-linked intellectual disability
22 genes
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22 of 22 corroborated by 2+ sources
FRMPD4(3), GRIA3(4), ARHGEF9(3), ARX(3), THOC2(5), PTCHD1(4), CNKSR2(4), AP1S2(4), IL1RAPL1(4), FTSJ1(3), IQSEC2(3), PCDH19(3) +10 more
0.250 0.629 4.43e-44 2.04e-42 ✓ sig. Cluster 115 →
Arrhythmogenic right ventricular cardiomyopathy Long qt syndrome
26 genes
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18 of 26 corroborated by 2+ sources
CACNB2(1), CTNNA3(7), DSG2(6), JUP(5), PKP2(7), RBM20(1), TRPM4(1), DSP(4), MYH6(1), RYR1(1), LMNA(2), RYR2(3) +14 more
0.202 0.500 3.05e-44 1.41e-42 ✓ sig. Cluster 4 →
Craniofacial abnormalities Desbuquois syndrome
59 genes
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57 of 59 corroborated by 2+ sources
HSPG2(2), SKI(2), FGF8(2), COLEC11(1), SOX9(2), FGD1(2), SLC26A2(2), COL2A1(2), BMPR1B(2), LTBP3(2), ACTB(2), NOTCH1(2) +47 more
0.089 0.378 2.76e-44 1.28e-42 ✓ sig. —
Congenital brain malformation Lissencephaly
17 genes
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CASK(1), ARL3(1), TMEM216(1), TMEM237(1), SEPSECS(1), KIAA0586(1), KIAA0753(1), CHMP1A(1), IFT74(1), TUBB3(1), AMPD2(1), INPP5E(1) +5 more
0.333 1.000 2.30e-44 1.07e-42 ✓ sig. Cluster 110 →
Congenital hypoplasia of part of brain Lissencephaly
17 genes
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CASK(1), ARL3(1), TMEM216(1), TMEM237(1), SEPSECS(1), KIAA0586(1), KIAA0753(1), CHMP1A(1), IFT74(1), TUBB3(1), AMPD2(1), INPP5E(1) +5 more
0.333 1.000 2.30e-44 1.07e-42 ✓ sig. Cluster 110 →
Lissencephaly Microgyria
17 genes
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CASK(1), ARL3(1), TMEM216(1), TMEM237(1), SEPSECS(1), KIAA0586(1), KIAA0753(1), CHMP1A(1), IFT74(1), TUBB3(1), AMPD2(1), INPP5E(1) +5 more
0.333 1.000 2.30e-44 1.07e-42 ✓ sig. Cluster 110 →
Calcinosis Heart valve disease
21 genes
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21 of 21 corroborated by 2+ sources
NOTCH1(2), COL18A1(2), SPP1(2), CASP3(2), IL1B(2), JAK2(2), CCL2(2), COL1A1(2), TIMP1(2), FCGR1A(2), IL18(2), LCN2(2) +9 more
0.313 0.512 1.09e-44 5.06e-43 ✓ sig. Cluster 370 →
Hypertrophic cardiomyopathy Left ventricular noncompaction cardiomyopathy
29 genes
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18 of 29 corroborated by 2+ sources
ACTN2(3), DMD(1), DSG2(1), JUP(1), MYPN(2), PKP2(1), RBM20(3), DSP(2), MYH6(4), RYR2(2), SCN5A(1), LDB3(1) +17 more
0.109 0.763 7.15e-45 3.34e-43 ✓ sig. —
Ciliopathy Joubert syndrome
25 genes
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25 of 25 corroborated by 2+ sources
ZNF423(4), CC2D2A(6), RPGRIP1L(6), TMEM67(7), SUFU(6), TMEM138(7), TMEM216(7), TMEM231(6), CEP120(7), TBC1D32(3), CEP41(6), IFT74(6) +13 more
0.238 0.431 5.15e-45 2.41e-43 ✓ sig. Cluster 8 →
Microform holoprosencephaly Syntelencephaly
14 genes
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14 of 14 corroborated by 2+ sources
FGF8(2), CDON(2), GLI2(2), SHH(2), PTCH1(2), SIX3(2), GAS1(2), ZIC2(2), DLL1(2), DISP1(2), CRIPTO(2), FOXH1(2) +2 more
0.778 0.933 3.75e-45 1.76e-43 ✓ sig. Cluster 96 →
Microform holoprosencephaly Septopreoptic holoprosencephaly
14 genes
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14 of 14 corroborated by 2+ sources
FGF8(2), CDON(2), GLI2(2), SHH(2), PTCH1(2), SIX3(2), GAS1(2), ZIC2(2), DLL1(2), DISP1(2), CRIPTO(2), FOXH1(2) +2 more
0.778 0.933 3.75e-45 1.76e-43 ✓ sig. Cluster 96 →
Muscle eye brain disease Walker-warburg syndrome
14 genes
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14 of 14 corroborated by 2+ sources
DAG1(3), GMPPB(4), LARGE1(3), CRPPA(3), POMGNT2(3), POMT1(4), POMT2(4), POMGNT1(4), FKRP(4), FKTN(4), B3GALNT2(3), B4GAT1(3) +2 more
0.778 0.933 3.75e-45 1.76e-43 ✓ sig. Cluster 14 →
Epilepsy Intellectual developmental disorder
81 genes
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63 of 81 corroborated by 2+ sources
FOXG1(2), UBE3A(2), CHRNA7(2), ANKRD11(2), HNRNPU(2), WWOX(1), ARID1B(2), AUTS2(4), CHD2(2), CNTNAP2(2), CPA6(2), GRIA1(5) +69 more
0.084 0.348 3.70e-45 1.75e-43 ✓ sig. —
Epilepsy Partial epilepsy
30 genes
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7 of 30 corroborated by 2+ sources
CACNA1H(1), CUX2(1), GABRA2(1), GRM3(1), OGA(1), PCDH7(1), PTPRD(1), RPH3A(1), SCN8A(2), TRIM36(1), ALDH2(1), CDKL5(2) +18 more
0.121 0.682 3.50e-45 1.66e-43 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.