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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Antiphospholipid syndrome Pemphigus vulgaris
4 genes
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3 of 4 corroborated by 2+ sources
0.167 0.571 7.22e-11 7.29e-10 ✓ sig. Cluster 1 →
Catecholaminergic polymorphic ventricular tachycardia Hereditary bundle branch system defect
4 genes
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1 of 4 corroborated by 2+ sources
TRPM4(1), DSP(1), CASQ2(7), SCN5A(1)
0.167 0.571 7.22e-11 7.29e-10 ✓ sig. Cluster 4 →
C3 glomerulonephritis Complement component deficiency
4 genes
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4 of 4 corroborated by 2+ sources
CFI(5), C3(8), CFB(7), CFH(5)
0.182 0.500 7.10e-11 7.17e-10 ✓ sig. —
Complement component deficiency Mesangiocapillary glomerulonephritis
4 genes
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4 of 4 corroborated by 2+ sources
CFI(5), C3(6), CFB(5), CFH(5)
0.182 0.500 7.10e-11 7.17e-10 ✓ sig. —
Complement component deficiency Complement pathway abnormality
4 genes
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4 of 4 corroborated by 2+ sources
C1S(5), C2(5), C4B(5), C4A(5)
0.182 0.500 7.10e-11 7.17e-10 ✓ sig. —
Hypercholanemia Hypercholesterolemia
4 genes
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4 of 4 corroborated by 2+ sources
EPHX1(3), TJP2(6), BAAT(5), SLC10A1(5)
0.085 1.000 6.97e-11 7.05e-10 ✓ sig. —
Congenital nonspherocytic hemolytic anemia Hereditary hemolytic anemia
4 genes
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4 of 4 corroborated by 2+ sources
GSS(3), GCLC(3), HK1(4), GPI(3)
0.200 0.364 6.96e-11 7.04e-10 ✓ sig. —
Neural tube defects, susceptibility to Neural tube defects, x-linked
4 genes
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4 of 4 corroborated by 2+ sources
VANGL2(4), TBXT(2), FUZ(3), VANGL1(3)
0.121 0.800 6.71e-11 6.79e-10 ✓ sig. —
Extraskeletal ewing sarcoma Skeletal ewing sarcoma
3 genes
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ERG(1), EWSR1(1), FLI1(1)
0.429 0.750 6.57e-11 6.66e-10 ✓ sig. Cluster 309 →
Kleins syndrome Waardenburg-shah syndrome
3 genes
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3 of 3 corroborated by 2+ sources
EDNRB(3), MITF(3), EDN3(3)
0.429 0.750 6.57e-11 6.66e-10 ✓ sig. Cluster 229 →
Hypogonadism Hypogonadotropic hypogonadism
8 genes
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8 of 8 corroborated by 2+ sources
IL17RD(4), TACR3(6), FSHB(5), TAC3(5), GNRH1(6), LHB(4), KISS1R(6), GNRHR(4)
0.069 0.170 6.50e-11 6.59e-10 ✓ sig. Cluster 54 →
Complete unilateral cleft lip Craniosynostosis
7 genes
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3 of 7 corroborated by 2+ sources
FGFR3(1), FGF10(2), NOG(1), FGFR2(2), MSX1(1), PTCH1(1), FGFR1(2)
0.079 0.194 6.43e-11 6.52e-10 ✓ sig. Cluster 63 →
Bone resorption Hypercalcemia
4 genes
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4 of 4 corroborated by 2+ sources
PTHLH(2), PTH(2), TNFRSF11B(2), TNFSF11(2)
0.200 0.400 6.39e-11 6.49e-10 ✓ sig. Cluster 262 →
Spondyloepimetaphyseal dysplasia Spondyloepiphyseal dysplasia
5 genes
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5 of 5 corroborated by 2+ sources
ACAN(6), COL2A1(8), TRPV4(6), B3GALT6(6), RPL13(6)
0.128 0.278 6.23e-11 6.32e-10 ✓ sig. Cluster 211 →
Amphetamine or sympathomimetic abuse Dyskinesia, drug-induced
6 genes
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6 of 6 corroborated by 2+ sources
PDYN(2), DRD1(2), DRD2(2), DRD3(2), GAD1(2), GDNF(2)
0.069 0.400 6.19e-11 6.29e-10 ✓ sig. Cluster 13 →
Allergic contact dermatitis Behcet disease
10 genes
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9 of 10 corroborated by 2+ sources
IL10(4), IL1A(3), IL2(2), IL4(2), TLR4(2), TNF(2), CYP1A1(2), IL18(2), NAT2(1), CCR1(3)
0.059 0.137 6.11e-11 6.21e-10 ✓ sig. Cluster 16 →
Kawasaki disease Sarcoidosis
11 genes
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4 of 11 corroborated by 2+ sources
BTNL2(5), SHANK2(1), TNF(1), HLA-DQB1(2), ZFHX3(1), CCR2(1), LTA(2), IL18(2), CCR5(1), HLA-DOB(1), TSBP1(1)
0.051 0.172 6.11e-11 6.21e-10 ✓ sig. —
Amyotrophic lateral sclerosis Charcot-marie-tooth disease
19 genes
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17 of 19 corroborated by 2+ sources
VCP(6), SETX(6), SPG11(7), SPTLC1(5), SIGMAR1(7), NRG1(1), BICD2(1), DCTN1(7), DYNC1H1(5), FIG4(8), IFRD1(2), KIF5A(5) +7 more
0.043 0.144 5.93e-11 6.03e-10 ✓ sig. Cluster 15 →
Focal epilepsy Partial epilepsy
4 genes
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4 of 4 corroborated by 2+ sources
DEPDC5(2), CLASP1(2), NPRL2(3), NPRL3(3)
0.089 1.000 5.80e-11 5.90e-10 ✓ sig. —
Bouillaud’s disease Pemphigus vulgaris
3 genes
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3 of 3 corroborated by 2+ sources
0.375 1.000 5.75e-11 5.86e-10 ✓ sig. Cluster 1 →
Benign hereditary chorea Bouillaud’s disease
3 genes
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0.375 1.000 5.75e-11 5.86e-10 ✓ sig. Cluster 1 →
Early-onset generalized limb-onset dystonia Torsion dystonia
3 genes
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3 of 3 corroborated by 2+ sources
EIF2AK2(3), TOR1A(4), SHQ1(2)
0.375 1.000 5.75e-11 5.86e-10 ✓ sig. Cluster 167 →
Epidermal nevus Schimmelpenning-feuerstein-mims syndrome
3 genes
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3 of 3 corroborated by 2+ sources
KRAS(2), NRAS(4), HRAS(4)
0.375 1.000 5.75e-11 5.86e-10 ✓ sig. Cluster 18 →
Maple syrup urine disease Thiamine-responsive maple syrup urine disease
3 genes
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3 of 3 corroborated by 2+ sources
BCKDHB(7), BCKDHA(8), DBT(7)
0.375 1.000 5.75e-11 5.86e-10 ✓ sig. —
Bor syndrome Branchiootorenal syndrome
3 genes
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3 of 3 corroborated by 2+ sources
EYA1(6), SIX5(7), SIX1(7)
0.375 1.000 5.75e-11 5.86e-10 ✓ sig. Cluster 145 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.