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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cardiac conduction disease Sick sinus syndrome
3 genes
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2 of 3 corroborated by 2+ sources
MYH6(3), LMNA(1), SCN5A(6)
0.120 0.333 1.12e-7 7.81e-7 ✓ sig. Cluster 4 →
Hematologic disease Polycythemia vera
3 genes
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1 of 3 corroborated by 2+ sources
H2BC4(1), H1-2(1), JAK2(4)
0.120 0.333 1.12e-7 7.81e-7 ✓ sig. —
Myocardial ischemia Periodontitis
18 genes
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14 of 18 corroborated by 2+ sources
CDH2(3), ABCA1(2), CDH13(1), KALRN(2), TCF7L2(3), TENM2(1), IL6(2), GSTM1(1), FTO(2), GDF15(3), DAB2IP(2), MMP9(2) +6 more
0.034 0.114 1.09e-7 7.59e-7 ✓ sig. —
Diabetic angiopathies Pancreatic diseases
3 genes
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3 of 3 corroborated by 2+ sources
AGER(2), HMOX1(2), ALB(2)
0.094 0.500 1.07e-7 7.48e-7 ✓ sig. —
Diabetic peripheral angiopathy Pancreatic diseases
3 genes
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3 of 3 corroborated by 2+ sources
AGER(2), HMOX1(2), ALB(2)
0.094 0.500 1.07e-7 7.48e-7 ✓ sig. —
Cervical intraepithelial neoplasia Oral cavity carcinoma
3 genes
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HLA-DQB1(1), HLA-B(1), CLPTM1L(1)
0.094 0.500 1.07e-7 7.48e-7 ✓ sig. Cluster 1 →
Emphysema Obstructive airway disease
6 genes
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6 of 6 corroborated by 2+ sources
TP53(2), SERPINA1(3), NOS2(2), CHRNA5(2), TNFRSF8(2), HDAC2(2)
0.046 0.167 1.07e-7 7.48e-7 ✓ sig. Cluster 119 →
Non-hodgkins lymphoma Peptic ulcer disease
10 genes
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1 of 10 corroborated by 2+ sources
FOXP1(1), HLA-DQA1(1), HLA-DQB3(1), HLA-DRA(1), HLA-DRB1(2), MECOM(1), TTC33(1), JRK(1), PSCA(1), LY6K(1)
0.040 0.083 1.06e-7 7.42e-7 ✓ sig. —
Cryptorchidism Penile hypospadia
3 genes
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HOXD13(1), LSM1(1), NIPBL(1)
0.115 0.375 1.05e-7 7.30e-7 ✓ sig. Cluster 103 →
Intracranial hemorrhage Thromboembolism
3 genes
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PLAU(1), PLAT(1), F7(1)
0.130 0.250 1.03e-7 7.19e-7 ✓ sig. —
Cachexia Hypercalcemia
3 genes
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3 of 3 corroborated by 2+ sources
TNF(2), IL6(2), PTHLH(2)
0.130 0.250 1.03e-7 7.19e-7 ✓ sig. —
Congenital pes cavus Sensory neuropathy
3 genes
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MPZ(1), GDAP1(1), GJB1(1)
0.130 0.250 1.03e-7 7.19e-7 ✓ sig. —
Eye neoplasms Oculocutaneous albinism
3 genes
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3 of 3 corroborated by 2+ sources
OCA2(7), TYR(6), SLC24A5(4)
0.130 0.250 1.03e-7 7.19e-7 ✓ sig. Cluster 298 →
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Lissencephaly
5 genes
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2 of 5 corroborated by 2+ sources
MACF1(5), CASK(1), SEPSECS(1), KIAA0586(1), TUBA1A(5)
0.061 0.139 1.03e-7 7.19e-7 ✓ sig. Cluster 110 →
Lymphocytic b-cell leukemia Lymphoma
5 genes
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1 of 5 corroborated by 2+ sources
BCL2(1), MTHFR(1), PTGS2(1), IRF4(2), TNFSF8(1)
0.060 0.147 1.03e-7 7.19e-7 ✓ sig. —
Diffuse cutaneous systemic sclerosis Uveomeningoencephalitic syndrome
3 genes
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1 of 3 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(2), STAT4(1)
0.107 0.429 1.01e-7 7.11e-7 ✓ sig. —
Gastrointestinal stromal tumor Syntelencephaly
4 genes
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4 of 4 corroborated by 2+ sources
CDON(3), GLI2(3), PTCH1(3), DISP1(3)
0.068 0.267 1.01e-7 7.11e-7 ✓ sig. Cluster 96 →
Frontotemporal dementia Frontotemporal dementia with or without amyotrophic lateral sclerosis
4 genes
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4 of 4 corroborated by 2+ sources
GRN(4), C9orf72(6), CCNF(5), CHMP2B(6)
0.058 0.333 1.01e-7 7.06e-7 ✓ sig. Cluster 102 →
Cystic fibrosis Vasculitis
5 genes
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2 of 5 corroborated by 2+ sources
SERPINA1(3), MPO(1), NOS3(1), SERPINA3(1), PLG(2)
0.057 0.172 9.90e-8 6.94e-7 ✓ sig. —
Azoospermia Male infertility
6 genes
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3 of 6 corroborated by 2+ sources
BCL2(2), TDRD9(1), CFTR(2), HENMT1(1), MOV10L1(1), SYCP3(2)
0.043 0.188 9.53e-8 6.68e-7 ✓ sig. Cluster 31 →
Diabetic angiopathies Transient ischemic attack
4 genes
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1 of 4 corroborated by 2+ sources
SERPINF1(2), EPO(1), SOD2(1), IL1RN(1)
0.082 0.167 9.06e-8 6.36e-7 ✓ sig. —
Diabetic peripheral angiopathy Transient ischemic attack
4 genes
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SERPINF1(1), EPO(1), SOD2(1), IL1RN(1)
0.082 0.167 9.06e-8 6.36e-7 ✓ sig. —
Ehlers-danlos syndrome Myopia
7 genes
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5 of 7 corroborated by 2+ sources
FBN1(2), FBN2(1), FLNA(2), MYH11(1), ZNF469(2), AEBP1(6), SLC39A13(5)
0.041 0.159 8.99e-8 6.31e-7 ✓ sig. Cluster 12 →
Delirium Dyskinesia, drug-induced
3 genes
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3 of 3 corroborated by 2+ sources
DRD2(2), DRD3(2), TH(2)
0.130 0.300 8.94e-8 6.27e-7 ✓ sig. —
Colobomatous microphthalmia Septo-optic dysplasia
3 genes
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3 of 3 corroborated by 2+ sources
SHH(2), SOX2(3), OTX2(2)
0.130 0.300 8.94e-8 6.27e-7 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.