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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Autoimmune lymphoproliferative disorder Melanocytic nevus
2 genes
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2 of 2 corroborated by 2+ sources
NRAS(4), CASP8(5)
0.095 0.182 2.54e-5 1.19e-4 ✓ sig. Cluster 18 →
Ductal carcinoma Prostatic intraepithelial neoplasia
2 genes
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PTEN(1), CDH1(1)
0.095 0.182 2.54e-5 1.19e-4 ✓ sig. —
Dyslipidemias Promyelocytic leukemia
3 genes
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3 of 3 corroborated by 2+ sources
PPARG(2), RARA(2), PML(2)
0.045 0.167 2.54e-5 1.19e-4 ✓ sig. —
Conotruncal cardiac defect Ventricular septal defect
4 genes
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4 of 4 corroborated by 2+ sources
TBX1(5), NKX2-6(5), NKX2-5(5), GATA6(5)
0.039 0.095 2.53e-5 1.18e-4 ✓ sig. —
Cleft lip and cleft of alveolar process of maxilla Ectodermal dysplasia
2 genes
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TP63(1), NECTIN1(1)
0.057 0.500 2.50e-5 1.17e-4 ✓ sig. —
Ectodermal dysplasia Pachyonychia congenita
2 genes
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2 of 2 corroborated by 2+ sources
KRT17(6), KRT16(6)
0.057 0.500 2.50e-5 1.17e-4 ✓ sig. —
Wagr syndrome Wilms tumor
2 genes
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2 of 2 corroborated by 2+ sources
WT1(7), PAX6(4)
0.057 0.500 2.50e-5 1.17e-4 ✓ sig. Cluster 35 →
Hepatoblastoma Wilms tumor
2 genes
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1 of 2 corroborated by 2+ sources
IGF2(3), CTNNB1(1)
0.057 0.500 2.50e-5 1.17e-4 ✓ sig. —
Congenital aneurysm of ascending aorta Tricuspid valve disease
2 genes
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MYH11(1), NDE1(1)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. —
Intervertebral disc disease Trigeminal neuralgia
2 genes
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2 of 2 corroborated by 2+ sources
IL1B(2), TNF(2)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. Cluster 180 →
Ductal carcinoma of breast Esotropia
2 genes
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2 of 2 corroborated by 2+ sources
SOD2(2), PTGS2(2)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. —
Ductal carcinoma of breast Tongue neoplasms
2 genes
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SOD2(1), PTGS2(1)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. Cluster 269 →
Dwarfism Ear, patella, short stature syndrome
2 genes
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2 of 2 corroborated by 2+ sources
ORC1(3), DONSON(2)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. Cluster 171 →
Angina pectoris Esotropia
2 genes
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1 of 2 corroborated by 2+ sources
TNF(2), CXCL8(1)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. Cluster 76 →
Majewski syndrome Saldino-noonan syndrome
2 genes
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NEK1(1), DYNC2H1(1)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. Cluster 22 →
Nanophthalmos Septo-optic dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
SOX2(3), OTX2(2)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. —
Common migraine Trigeminal neuralgia
2 genes
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2 of 2 corroborated by 2+ sources
TNF(2), CALCA(2)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. —
Bone resorption Cachexia
2 genes
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PTHLH(1), GHRL(1)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. —
Esotropia Papilloma
2 genes
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2 of 2 corroborated by 2+ sources
SOD2(2), PTGS2(2)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. —
monogenic diabetes Paralysis
2 genes
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2 of 2 corroborated by 2+ sources
INS(2), SIRT1(2)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. —
Endometrial hyperplasia Intestinal neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
CTNNB1(2), APC(2)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. —
Childhood absence epilepsy Lennox-gastaut syndrome
2 genes
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2 of 2 corroborated by 2+ sources
GABRG2(2), GABRB3(4)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. Cluster 47 →
Childhood absence epilepsy Idiopathic generalized epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
GABRA1(3), SLC2A1(4)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. Cluster 47 →
Hydronephrosis Hypertensive heart disease
2 genes
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PDILT(1), UMOD(1)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. —
Hyperoxaluria Pleural diseases
2 genes
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2 of 2 corroborated by 2+ sources
IL6(2), CCL2(2)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.