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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Osteopetrosis Platelet disorder
2 genes
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1 of 2 corroborated by 2+ sources
FERMT3(2), CD36(1)
0.069 0.154 8.89e-5 3.17e-4 ✓ sig. —
Byzanthine arch palate Eye abnormalities
2 genes
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2 of 2 corroborated by 2+ sources
TFAP2A(2), SHH(2)
0.069 0.154 8.89e-5 3.17e-4 ✓ sig. —
Constitutional mismatch repair deficiency Eye abnormalities
2 genes
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2 of 2 corroborated by 2+ sources
APC(2), TGFBR2(2)
0.069 0.154 8.89e-5 3.17e-4 ✓ sig. —
Dupuytren contracture Stevens-johnson syndrome
5 genes
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2 of 5 corroborated by 2+ sources
ELMO1(3), ZC3H12D(1), TAB2(1), MAFB(1), NEDD4(3)
0.031 0.064 8.72e-5 3.11e-4 ✓ sig. —
Delirium Keratitis
2 genes
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1 of 2 corroborated by 2+ sources
IL6(1), CXCL8(2)
0.065 0.200 8.71e-5 3.11e-4 ✓ sig. —
Carcinogenesis Cardiofaciocutaneous syndrome
2 genes
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2 of 2 corroborated by 2+ sources
BRAF(7), KRAS(8)
0.069 0.167 8.46e-5 3.02e-4 ✓ sig. —
Atrioventricular septal defect Hypoplastic left heart syndrome
2 genes
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FOXP1(1), GJA1(1)
0.069 0.167 8.46e-5 3.02e-4 ✓ sig. —
Cervical intraepithelial neoplasia Toxic epidermal necrolysis
2 genes
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1 of 2 corroborated by 2+ sources
HLA-B(2), MICA(1)
0.048 0.333 8.38e-5 2.99e-4 ✓ sig. —
Breast neoplasms Polycystic ovary syndrome
20 genes
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20 of 20 corroborated by 2+ sources
CHEK2(2), EMSY(2), ERBB3(2), FST(2), YAP1(2), BAX(2), BCL2(2), CYP19A1(2), LEP(2), NRG1(2), VDR(2), FTO(2) +8 more
0.028 0.088 8.35e-5 2.98e-4 ✓ sig. —
Granulomatous disease Williams syndrome
2 genes
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1 of 2 corroborated by 2+ sources
NCF1(5), RNF157(1)
0.063 0.222 8.33e-5 2.97e-4 ✓ sig. —
Aneurysm Metaphyseal chondrodysplasia
2 genes
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2 of 2 corroborated by 2+ sources
FBN1(2), MMP13(5)
0.059 0.250 8.24e-5 2.94e-4 ✓ sig. —
Congenital ear anomaly hearing loss, autosomal recessive
2 genes
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2 of 2 corroborated by 2+ sources
PTPRQ(2), PDZD7(2)
0.054 0.286 8.19e-5 2.92e-4 ✓ sig. —
Partial adenosine deaminase deficiency Pelvic organ prolapse
2 genes
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2 of 2 corroborated by 2+ sources
PKIG(2), ADA(2)
0.014 1.000 8.09e-5 2.89e-4 ✓ sig. —
Lymphoblastic leukemia Post-operative stroke
2 genes
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TP63(1), RYR2(1)
0.033 0.500 8.04e-5 2.87e-4 ✓ sig. —
Hyperemia Secondary parkinson disease
2 genes
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2 of 2 corroborated by 2+ sources
NOS2(2), CNR2(2)
0.071 0.143 8.01e-5 2.86e-4 ✓ sig. —
Ataxia Childhood absence epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
GABRA1(2), SLC2A1(3)
0.067 0.200 7.92e-5 2.83e-4 ✓ sig. Cluster 47 →
Down syndrome Transposition of the great arteries
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), SLC19A1(2)
0.069 0.182 7.88e-5 2.82e-4 ✓ sig. Cluster 113 →
Hydrops fetalis Lymphatic malformation
2 genes
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2 of 2 corroborated by 2+ sources
CELSR1(4), PIEZO1(5)
0.071 0.154 7.84e-5 2.80e-4 ✓ sig. —
Congenital vertebral-cardiac-renal anomalies syndrome Hyperopia
2 genes
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2 of 2 corroborated by 2+ sources
KYNU(3), NADSYN1(3)
0.025 0.667 7.77e-5 2.78e-4 ✓ sig. Cluster 386 →
Anti-neutrophil antibody associated vasculitis Irritant dermatitis
2 genes
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2 of 2 corroborated by 2+ sources
0.065 0.222 7.63e-5 2.73e-4 ✓ sig. —
C1q deficiency Stevens-johnson syndrome
2 genes
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2 of 2 corroborated by 2+ sources
C1QA(5), C1QC(5)
0.025 0.667 7.57e-5 2.71e-4 ✓ sig. —
Growth disorder Hemolysis
2 genes
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HMOX1(1), ATP7A(1)
0.050 0.333 7.49e-5 2.68e-4 ✓ sig. —
Charcot-marie-tooth disease Giant axonal neuropathy
2 genes
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2 of 2 corroborated by 2+ sources
GAN(7), DCAF8(6)
0.015 1.000 7.29e-5 2.61e-4 ✓ sig. —
Brain disease West syndrome
3 genes
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3 of 3 corroborated by 2+ sources
KCNQ2(2), TSC2(2), TSC1(2)
0.043 0.100 7.28e-5 2.61e-4 ✓ sig. —
Cushing's disease Potassium deficiency
2 genes
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POMC(1), NR3C1(1)
0.071 0.182 7.05e-5 2.53e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.