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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Bone resorption Hypercalcemia
4 genes
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4 of 4 corroborated by 2+ sources
PTHLH(2), PTH(2), TNFRSF11B(2), TNFSF11(2)
0.200 0.400 6.39e-11 6.49e-10 ✓ sig. Cluster 262 →
Complete unilateral cleft lip Craniosynostosis
7 genes
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3 of 7 corroborated by 2+ sources
FGFR3(1), FGF10(2), NOG(1), FGFR2(2), MSX1(1), PTCH1(1), FGFR1(2)
0.079 0.194 6.43e-11 6.52e-10 ✓ sig. Cluster 63 →
Hypogonadism Hypogonadotropic hypogonadism
8 genes
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8 of 8 corroborated by 2+ sources
IL17RD(4), TACR3(6), FSHB(5), TAC3(5), GNRH1(6), LHB(4), KISS1R(6), GNRHR(4)
0.069 0.170 6.50e-11 6.59e-10 ✓ sig. Cluster 54 →
Kleins syndrome Waardenburg-shah syndrome
3 genes
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3 of 3 corroborated by 2+ sources
EDNRB(3), MITF(3), EDN3(3)
0.429 0.750 6.57e-11 6.66e-10 ✓ sig. Cluster 229 →
Extraskeletal ewing sarcoma Skeletal ewing sarcoma
3 genes
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ERG(1), EWSR1(1), FLI1(1)
0.429 0.750 6.57e-11 6.66e-10 ✓ sig. Cluster 309 →
Neural tube defects, susceptibility to Neural tube defects, x-linked
4 genes
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4 of 4 corroborated by 2+ sources
VANGL2(4), TBXT(2), FUZ(3), VANGL1(3)
0.121 0.800 6.71e-11 6.79e-10 ✓ sig. —
Congenital nonspherocytic hemolytic anemia Hereditary hemolytic anemia
4 genes
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4 of 4 corroborated by 2+ sources
GSS(3), GCLC(3), HK1(4), GPI(3)
0.200 0.364 6.96e-11 7.04e-10 ✓ sig. —
Hypercholanemia Hypercholesterolemia
4 genes
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4 of 4 corroborated by 2+ sources
EPHX1(3), TJP2(6), BAAT(5), SLC10A1(5)
0.085 1.000 6.97e-11 7.05e-10 ✓ sig. —
C3 glomerulonephritis Complement component deficiency
4 genes
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4 of 4 corroborated by 2+ sources
CFI(5), C3(8), CFB(7), CFH(5)
0.182 0.500 7.10e-11 7.17e-10 ✓ sig. —
Complement component deficiency Mesangiocapillary glomerulonephritis
4 genes
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4 of 4 corroborated by 2+ sources
CFI(5), C3(6), CFB(5), CFH(5)
0.182 0.500 7.10e-11 7.17e-10 ✓ sig. —
Complement component deficiency Complement pathway abnormality
4 genes
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4 of 4 corroborated by 2+ sources
C1S(5), C2(5), C4B(5), C4A(5)
0.182 0.500 7.10e-11 7.17e-10 ✓ sig. —
Antiphospholipid syndrome Pemphigus vulgaris
4 genes
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3 of 4 corroborated by 2+ sources
0.167 0.571 7.22e-11 7.29e-10 ✓ sig. Cluster 1 →
Catecholaminergic polymorphic ventricular tachycardia Hereditary bundle branch system defect
4 genes
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1 of 4 corroborated by 2+ sources
TRPM4(1), DSP(1), CASQ2(7), SCN5A(1)
0.167 0.571 7.22e-11 7.29e-10 ✓ sig. Cluster 4 →
Marfan syndrome Urethral obstruction
6 genes
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3 of 6 corroborated by 2+ sources
TGFB2(2), SMAD3(1), ACTA2(1), NOS2(2), COL3A1(2), HEY2(1)
0.094 0.231 7.28e-11 7.34e-10 ✓ sig. —
Progressive myoclonic epilepsy Rolandic epilepsy
6 genes
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6 of 6 corroborated by 2+ sources
SCARB2(6), PRICKLE1(6), PRICKLE2(2), TBC1D24(5), DEPDC5(2), CSTB(2)
0.091 0.250 7.50e-11 7.56e-10 ✓ sig. —
Christ-siemens-touraine syndrome Ectodermal dysplasia
4 genes
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3 of 4 corroborated by 2+ sources
EDAR(4), EDA(3), RANBP2(1), EDARADD(5)
0.118 0.800 7.67e-11 7.72e-10 ✓ sig. Cluster 117 →
Cleft lip Craniosynostosis
7 genes
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5 of 7 corroborated by 2+ sources
FGFR3(2), FGF10(3), NOG(1), FGFR2(2), MSX1(1), PTCH1(2), FGFR1(2)
0.078 0.189 7.90e-11 7.96e-10 ✓ sig. Cluster 63 →
Atrial fibrillation Uterine fibroid
48 genes
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11 of 48 corroborated by 2+ sources
CASZ1(3), HSPG2(3), RUNX1(1), CELA3B(1), ESR2(3), FOXO1(1), HEATR3(1), MDM4(1), NCOR2(1), NKAIN2(1), PIK3C2B(1), SORCS3(1) +36 more
0.043 0.157 7.96e-11 8.01e-10 ✓ sig. —
Inflammatory skin disease Psoriatic arthritis
9 genes
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2 of 9 corroborated by 2+ sources
IFIH1(1), TNIP1(1), REV3L(1), TRAF3IP2(3), FAP(1), IL23R(1), NOS2(3), TNFAIP3(1), STAT2(1)
0.064 0.123 8.04e-11 8.09e-10 ✓ sig. —
Night blindness, congenital stationary Retinitis punctata albescens
4 genes
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3 of 4 corroborated by 2+ sources
RDH5(2), RHO(4), RLBP1(3), CD63(1)
0.143 0.667 8.09e-11 8.13e-10 ✓ sig. —
Neural tube defect Neural tube defects, folate-sensitive
4 genes
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4 of 4 corroborated by 2+ sources
MTHFR(3), MTRR(3), MTR(3), MTHFD1(3)
0.082 1.000 8.31e-11 8.35e-10 ✓ sig. —
Hyperkinesia Hypotension
7 genes
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7 of 7 corroborated by 2+ sources
GRIA1(2), GCG(2), IL2(2), ADORA2A(2), DRD1(2), DRD2(2), OXT(2)
0.074 0.212 8.36e-11 8.40e-10 ✓ sig. Cluster 13 →
Atherosclerosis Peripheral arterial disease
14 genes
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6 of 14 corroborated by 2+ sources
ABCA1(3), HDAC9(3), LDLR(3), SMARCA4(1), TCF7L2(1), ESR1(3), MTHFR(1), ATXN2(1), IL6(3), CHRNA3(1), TWIST1(1), LPA(2) +2 more
0.049 0.118 8.69e-11 8.72e-10 ✓ sig. Cluster 307 →
Central nervous system non-hodgkin lymphoma Crest syndrome
4 genes
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1 of 4 corroborated by 2+ sources
HLA-DRB1(2), HLA-DRB5(1), EXOC2(1), IRF4(1)
0.160 0.571 8.92e-11 8.95e-10 ✓ sig. —
Coronary restenosis Vascular system injury
4 genes
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4 of 4 corroborated by 2+ sources
ACE(2), SPP1(2), HMOX1(2), TNF(2)
0.190 0.400 8.95e-11 8.98e-10 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.