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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Blepharoptosis Costello syndrome
2 genes
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2 of 2 corroborated by 2+ sources
PTPN11(3), SOS1(2)
0.065 0.154 1.12e-4 3.93e-4 ✓ sig. Cluster 42 →
Agammaglobulinemia Burkitt lymphoma
2 genes
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2 of 2 corroborated by 2+ sources
PIK3R1(5), TCF3(5)
0.065 0.154 1.12e-4 3.93e-4 ✓ sig. Cluster 181 →
Bicuspid aortic valve Hypoplastic left heart syndrome
2 genes
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2 of 2 corroborated by 2+ sources
NOTCH1(3), NKX2-5(5)
0.065 0.143 1.16e-4 3.93e-4 ✓ sig. —
Substance-induced psychosis Tremor
2 genes
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HTR1A(1), ADORA2A(1)
0.065 0.133 1.19e-4 3.93e-4 ✓ sig. Cluster 13 →
Diabetic cardiomyopathy Potassium deficiency
2 genes
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2 of 2 corroborated by 2+ sources
INS(2), AGT(2)
0.065 0.143 1.16e-4 3.93e-4 ✓ sig. —
Hemorrhagic disease Thromboembolism
2 genes
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2 of 2 corroborated by 2+ sources
JAK2(2), F7(2)
0.063 0.167 1.16e-4 3.93e-4 ✓ sig. —
Central serous retinopathy Fuchs endothelial dystrophy
2 genes
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RORA(1), CFH(1)
0.061 0.182 1.16e-4 3.93e-4 ✓ sig. —
Cardiofaciocutaneous syndrome Cerebral arteriovenous malformations
2 genes
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2 of 2 corroborated by 2+ sources
BRAF(7), KRAS(8)
0.061 0.167 1.28e-4 3.93e-4 ✓ sig. —
Angina pectoris Keratitis
2 genes
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1 of 2 corroborated by 2+ sources
TLR4(2), CXCL8(1)
0.061 0.167 1.28e-4 3.93e-4 ✓ sig. —
Hyperoxaluria Mucopolysaccharidosis
2 genes
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2 of 2 corroborated by 2+ sources
IDUA(5), SLC26A1(2)
0.061 0.167 1.28e-4 3.93e-4 ✓ sig. —
Anti-neutrophil antibody associated vasculitis Gastroparesis
2 genes
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0.061 0.182 1.16e-4 3.93e-4 ✓ sig. Cluster 1 →
Cutaneous lupus erythematosus Mixed connective tissue disease
2 genes
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1 of 2 corroborated by 2+ sources
HLA-DRB1(2), KCNMB2(1)
0.059 0.182 1.27e-4 3.93e-4 ✓ sig. —
Hyperphosphatasia with intellectual disability syndrome Uranostaphyloschisis
2 genes
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1 of 2 corroborated by 2+ sources
SETD5(1), PIGW(6)
0.059 0.182 1.27e-4 3.93e-4 ✓ sig. —
Apraxia Language development disorders
2 genes
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2 of 2 corroborated by 2+ sources
BCL11A(2), FOXP2(2)
0.057 0.200 1.22e-4 3.93e-4 ✓ sig. —
Deafness, x-linked Leukodystrophy
2 genes
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1 of 2 corroborated by 2+ sources
AIFM1(4), RAB33A(1)
0.057 0.200 1.22e-4 3.93e-4 ✓ sig. —
Epithelial ovarian carcinoma Venous insufficiency
2 genes
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2 of 2 corroborated by 2+ sources
GSTT1(2), ABO(2)
0.056 0.222 1.14e-4 3.93e-4 ✓ sig. —
Internet addiction disorder Peritoneal disease
2 genes
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DISC1(1), ERBB4(1)
0.056 0.222 1.14e-4 3.93e-4 ✓ sig. —
Spermatogenic failure, x-linked Testicular azoospermia
2 genes
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2 of 2 corroborated by 2+ sources
GCNA(3), TEX11(4)
0.050 0.250 1.24e-4 3.93e-4 ✓ sig. Cluster 31 →
complex neurodevelopmental disorder with motor features Dystonia
2 genes
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2 of 2 corroborated by 2+ sources
KMT2B(7), CACNA1B(2)
0.041 0.333 1.19e-4 3.93e-4 ✓ sig. —
Salivary gland neoplasms Transitional cell carcinoma
3 genes
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DAPK1(1), CCND1(1), ESPL1(1)
0.040 0.091 1.12e-4 3.93e-4 ✓ sig. —
Osteonecrosis Vesicoureteral reflux
3 genes
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CSGALNACT1(1), PAG1(1), ZNF704(1)
0.040 0.079 1.19e-4 3.93e-4 ✓ sig. —
Cerebral hemorrhage Otosclerosis
3 genes
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3 of 3 corroborated by 2+ sources
SPP1(2), COL4A2(2), KDR(2)
0.038 0.103 1.18e-4 3.93e-4 ✓ sig. —
Glycine encephalopathy Hyperglycemia
2 genes
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2 of 2 corroborated by 2+ sources
GLDC(7), AMT(8)
0.036 0.400 1.11e-4 3.93e-4 ✓ sig. —
Conotruncal cardiac defect Hereditary atrial fibrillation
3 genes
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3 of 3 corroborated by 2+ sources
NKX2-6(6), NKX2-5(6), GATA6(6)
0.035 0.125 1.24e-4 3.93e-4 ✓ sig. —
Ehlers-danlos syndrome Hemorrhoid
4 genes
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4 of 4 corroborated by 2+ sources
SMAD3(2), THBS2(5), MYH11(2), COL5A2(8)
0.031 0.091 1.19e-4 3.93e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.