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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Partial adenosine deaminase deficiency Pelvic organ prolapse
2 genes
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2 of 2 corroborated by 2+ sources
PKIG(2), ADA(2)
0.014 1.000 8.09e-5 2.89e-4 ✓ sig. —
Congenital ear anomaly hearing loss, autosomal recessive
2 genes
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2 of 2 corroborated by 2+ sources
PTPRQ(2), PDZD7(2)
0.054 0.286 8.19e-5 2.92e-4 ✓ sig. —
Aneurysm Metaphyseal chondrodysplasia
2 genes
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2 of 2 corroborated by 2+ sources
FBN1(2), MMP13(5)
0.059 0.250 8.24e-5 2.94e-4 ✓ sig. —
Granulomatous disease Williams syndrome
2 genes
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1 of 2 corroborated by 2+ sources
NCF1(5), RNF157(1)
0.063 0.222 8.33e-5 2.97e-4 ✓ sig. —
Breast neoplasms Polycystic ovary syndrome
20 genes
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20 of 20 corroborated by 2+ sources
CHEK2(2), EMSY(2), ERBB3(2), FST(2), YAP1(2), BAX(2), BCL2(2), CYP19A1(2), LEP(2), NRG1(2), VDR(2), FTO(2) +8 more
0.028 0.088 8.35e-5 2.98e-4 ✓ sig. —
Cervical intraepithelial neoplasia Toxic epidermal necrolysis
2 genes
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1 of 2 corroborated by 2+ sources
HLA-B(2), MICA(1)
0.048 0.333 8.38e-5 2.99e-4 ✓ sig. —
Atrioventricular septal defect Hypoplastic left heart syndrome
2 genes
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FOXP1(1), GJA1(1)
0.069 0.167 8.46e-5 3.02e-4 ✓ sig. —
Carcinogenesis Cardiofaciocutaneous syndrome
2 genes
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2 of 2 corroborated by 2+ sources
BRAF(7), KRAS(8)
0.069 0.167 8.46e-5 3.02e-4 ✓ sig. —
Delirium Keratitis
2 genes
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1 of 2 corroborated by 2+ sources
IL6(1), CXCL8(2)
0.065 0.200 8.71e-5 3.11e-4 ✓ sig. —
Dupuytren contracture Stevens-johnson syndrome
5 genes
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2 of 5 corroborated by 2+ sources
ELMO1(3), ZC3H12D(1), TAB2(1), MAFB(1), NEDD4(3)
0.031 0.064 8.72e-5 3.11e-4 ✓ sig. —
Byzanthine arch palate Eye abnormalities
2 genes
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2 of 2 corroborated by 2+ sources
TFAP2A(2), SHH(2)
0.069 0.154 8.89e-5 3.17e-4 ✓ sig. —
Constitutional mismatch repair deficiency Eye abnormalities
2 genes
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2 of 2 corroborated by 2+ sources
APC(2), TGFBR2(2)
0.069 0.154 8.89e-5 3.17e-4 ✓ sig. —
Bronchiectasis Congestive ophthalmopathy
2 genes
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2 of 2 corroborated by 2+ sources
ICAM1(2), TNF(2)
0.069 0.154 8.89e-5 3.17e-4 ✓ sig. —
Osteopetrosis Platelet disorder
2 genes
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1 of 2 corroborated by 2+ sources
FERMT3(2), CD36(1)
0.069 0.154 8.89e-5 3.17e-4 ✓ sig. —
Hyperopia Retinal detachment
4 genes
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1 of 4 corroborated by 2+ sources
PTPRN2(1), NOG(2), LAMA2(1), RDH5(1)
0.033 0.087 8.89e-5 3.17e-4 ✓ sig. —
Hemorrhoid Thoracic aortic aneurysm and aortic dissection
4 genes
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4 of 4 corroborated by 2+ sources
ELN(4), SMAD3(6), MYH11(6), COL5A2(2)
0.032 0.098 8.97e-5 3.20e-4 ✓ sig. —
Congenital epicanthus Patent ductus arteriosus
2 genes
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ABCC9(1), PTPN11(1)
0.069 0.143 9.15e-5 3.26e-4 ✓ sig. —
Angle closure glaucoma Pulmonary edema
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), NOS3(2)
0.069 0.143 9.15e-5 3.26e-4 ✓ sig. Cluster 21 →
Avascular necrosis of bone Pulmonary edema
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), NOS3(2)
0.069 0.143 9.15e-5 3.26e-4 ✓ sig. Cluster 21 →
Hyperemia Pulmonary edema
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), ADIPOQ(2)
0.069 0.143 9.15e-5 3.26e-4 ✓ sig. —
Osteonecrosis of medial femoral condyle Pulmonary edema
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), NOS3(2)
0.069 0.143 9.15e-5 3.26e-4 ✓ sig. Cluster 21 →
Cholangitis Dentinogenesis imperfecta
2 genes
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2 of 2 corroborated by 2+ sources
ITGB6(2), COL1A1(2)
0.069 0.143 9.15e-5 3.26e-4 ✓ sig. —
Fatty liver, alcoholic Trifunctional protein deficiency
2 genes
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1 of 2 corroborated by 2+ sources
HADHA(2), HADHB(1)
0.023 0.667 9.22e-5 3.28e-4 ✓ sig. —
Combined immunodeficiency disease Pharyngeal disorder
3 genes
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3 of 3 corroborated by 2+ sources
IKZF1(2), FOXN1(3), CARMIL2(2)
0.041 0.097 9.25e-5 3.29e-4 ✓ sig. —
Developmental delay syndromic intellectual disability
3 genes
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3 of 3 corroborated by 2+ sources
TRIO(2), KAT6A(2), MED13L(2)
0.042 0.083 9.36e-5 3.33e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.