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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Brain disease Tuberous sclerosis complex
3 genes
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3 of 3 corroborated by 2+ sources
IFNG(4), TSC2(7), TSC1(7)
0.065 0.500 3.75e-7 2.39e-6 ✓ sig. —
Amnesia Pruritus
3 genes
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3 of 3 corroborated by 2+ sources
GRP(2), PDYN(2), TAC1(2)
0.103 0.231 3.81e-7 2.40e-6 ✓ sig. —
Anorexia Congestive ophthalmopathy
3 genes
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3 of 3 corroborated by 2+ sources
IL2(2), TNF(2), IL1RN(2)
0.103 0.231 3.81e-7 2.40e-6 ✓ sig. Cluster 147 →
Anorexia Myopathic ophthalmopathy
3 genes
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3 of 3 corroborated by 2+ sources
IL2(2), TNF(2), IL1RN(2)
0.103 0.231 3.81e-7 2.40e-6 ✓ sig. Cluster 147 →
Non-small cell lung carcinoma Small cell lung carcinoma
8 genes
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2 of 8 corroborated by 2+ sources
ALDH1A2(1), EGFR(3), GRIK3(2), HLA-DQA1(1), HLA-DRB1(1), CHRNA5(1), BRCA2(1), BAG6(1)
0.040 0.088 3.84e-7 2.42e-6 ✓ sig. —
Hyperopia Myopia
8 genes
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8 of 8 corroborated by 2+ sources
IRX5(3), CHD7(2), KCNQ5(3), PRSS56(3), LAMA2(3), RASGRF1(3), GJD2(3), RDH5(3)
0.039 0.101 3.91e-7 2.46e-6 ✓ sig. —
Hyperuricemia Urolithiasis
6 genes
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1 of 6 corroborated by 2+ sources
VEGFA(1), WDR72(1), GCKR(1), ABCG2(5), BCAS1(1), HCRTR2(1)
0.047 0.094 3.96e-7 2.49e-6 ✓ sig. Cluster 178 →
Conotruncal cardiac defect Tetralogy of fallot
7 genes
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7 of 7 corroborated by 2+ sources
TBX1(6), ZFPM2(7), NKX2-6(6), NKX2-5(7), GATA6(6), GDF1(3), FOXH1(2)
0.041 0.111 3.98e-7 2.50e-6 ✓ sig. Cluster 111 →
Sezary syndrome Small cell carcinoma
3 genes
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TP53(1), SMARCA4(1), RB1(1)
0.088 0.333 4.01e-7 2.52e-6 ✓ sig. Cluster 3 →
primary ciliary dyskinesia Teratozoospermia
3 genes
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3 of 3 corroborated by 2+ sources
DNAH10(2), CFAP43(2), DNAH1(2)
0.088 0.333 4.01e-7 2.52e-6 ✓ sig. —
Brain disease Delirium, dementia, and cognitive disorders
5 genes
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5 of 5 corroborated by 2+ sources
APP(2), CDK5R1(2), SLC1A1(2), TSC1(2), OTC(2)
0.053 0.119 4.07e-7 2.56e-6 ✓ sig. Cluster 351 →
Auditory neuropathy Congenital ear anomaly
4 genes
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OTOF(1), AIFM1(1), MYO7A(1), RAB33A(1)
0.068 0.129 4.07e-7 2.56e-6 ✓ sig. Cluster 26 →
Membranous glomerulonephritis Pemphigus
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), C3(2)
0.081 0.375 4.11e-7 2.58e-6 ✓ sig. Cluster 1 →
Heterotaxy syndrome Transposition of the great arteries
3 genes
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2 of 3 corroborated by 2+ sources
CFC1(5), CERS1(1), GDF1(2)
0.097 0.273 4.15e-7 2.60e-6 ✓ sig. —
Carotid artery disease Giant cell arteritis
4 genes
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1 of 4 corroborated by 2+ sources
TLR4(1), MMP9(1), CCL2(2), MMP2(1)
0.057 0.222 4.29e-7 2.70e-6 ✓ sig. —
Ciliary dyskinesia Teratozoospermia
5 genes
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5 of 5 corroborated by 2+ sources
HYDIN(7), DNAH10(3), CFAP43(2), DNAH1(6), TTC12(6)
0.044 0.185 4.45e-7 2.79e-6 ✓ sig. —
Keratoconus Thoracic aortic aneurysm and aortic dissection
6 genes
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4 of 6 corroborated by 2+ sources
COL5A1(2), PLOD1(1), SMAD3(6), COL1A1(2), LOX(6), COL5A2(1)
0.041 0.146 4.48e-7 2.81e-6 ✓ sig. Cluster 12 →
Lymphoid leukemia Osteomyelitis
3 genes
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3 of 3 corroborated by 2+ sources
TERT(2), HLA-DQB1(2), MYNN(2)
0.086 0.333 4.49e-7 2.82e-6 ✓ sig. —
Mitral valve prolapse Wolff-parkinson-white syndrome
5 genes
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2 of 5 corroborated by 2+ sources
COL5A1(1), RBM20(2), TBX5(2), FLNA(1), TTN(1)
0.053 0.106 4.50e-7 2.82e-6 ✓ sig. —
Hypercalcemia Hyperparathyroidism
3 genes
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3 of 3 corroborated by 2+ sources
IL6(2), PTH(2), CASR(3)
0.100 0.231 4.52e-7 2.83e-6 ✓ sig. —
Neuropathy Optic neuritis
3 genes
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ATP7B(1), EFEMP1(1), PNPT1(1)
0.100 0.231 4.52e-7 2.83e-6 ✓ sig. —
Ovarian agenesis Testicular hydrocele
2 genes
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DIPK1A(1), RPL5(1)
0.167 1.000 4.64e-7 2.90e-6 ✓ sig. Cluster 236 →
Macrothrombocytopenia platelet-type bleeding disorder 16
2 genes
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2 of 2 corroborated by 2+ sources
ITGB3(3), ITGA2B(3)
0.167 1.000 4.64e-7 2.90e-6 ✓ sig. Cluster 33 →
Cantu syndrome Hypertrichosis
2 genes
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2 of 2 corroborated by 2+ sources
ABCC9(7), KCNJ8(3)
0.167 1.000 4.64e-7 2.90e-6 ✓ sig. Cluster 234 →
Erythroid hypoplasia Testicular hydrocele
2 genes
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DIPK1A(1), RPL5(1)
0.167 1.000 4.64e-7 2.90e-6 ✓ sig. Cluster 236 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.