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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Allergic contact dermatitis Autoimmune hepatitis
6 genes
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6 of 6 corroborated by 2+ sources
IL10(2), IL2(2), IL4(2), IFNG(2), IL18(2), IL5(2)
0.057 0.158 2.25e-8 1.75e-7 ✓ sig. Cluster 16 →
Hyperinsulinemic hypoglycemia Transient neonatal diabetes mellitus
3 genes
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3 of 3 corroborated by 2+ sources
ABCC8(6), KCNJ11(6), GCK(4)
0.167 0.333 2.27e-8 1.77e-7 ✓ sig. Cluster 36 →
Cardiac conduction disease Short qt syndrome
3 genes
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CACNB2(1), TRPM4(1), SCN5A(1)
0.167 0.333 2.27e-8 1.77e-7 ✓ sig. —
Differentiated thyroid carcinoma Neuroblastoma
8 genes
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6 of 8 corroborated by 2+ sources
TERT(3), NTRK1(2), KRAS(2), NRAS(2), ALK(2), SLK(1), STN1(1), HRAS(2)
0.041 0.163 2.28e-8 1.77e-7 ✓ sig. —
Atrioventricular septal defect Ventricular septal defect
4 genes
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3 of 4 corroborated by 2+ sources
GATA4(5), TBX5(1), GATA6(6), CRELD1(6)
0.078 0.333 2.33e-8 1.81e-7 ✓ sig. —
Hemolytic uremic syndrome Mitochondrial myopathy
4 genes
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4 of 4 corroborated by 2+ sources
IL1A(2), IL1B(2), TNF(2), IL6(2)
0.089 0.267 2.35e-8 1.82e-7 ✓ sig. —
Gastrointestinal stromal tumor Holoprosencephaly
5 genes
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5 of 5 corroborated by 2+ sources
CDON(6), GLI2(6), PTCH1(7), BOC(2), DISP1(5)
0.069 0.172 2.39e-8 1.86e-7 ✓ sig. Cluster 96 →
erythrocytosis, familial, 7 Hemoglobin barts fetalis syndrome
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(3), HBA2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
erythrocytosis, familial, 7 Hemoglobin h disease
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(6), HBA2(6)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
erythrocytosis, familial, 7 Hemoglobin m disease
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(4), HBA2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
Gm2 gangliosidosis Tay-sachs disease
2 genes
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2 of 2 corroborated by 2+ sources
HEXA(7), GM2A(6)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. —
Congenital scoliosis Geleophysic dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
FBN1(5), LTBP3(6)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 52 →
Craniofacial dysostosis Crouzon syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FGFR2(7), ERF(2)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. —
Craniofaciosynostosis Trigonocephaly
2 genes
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2 of 2 corroborated by 2+ sources
FGFR1(3), FREM1(4)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 185 →
Craniometadiaphyseal dysplasia Craniometaphyseal dysplasia
2 genes
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1 of 2 corroborated by 2+ sources
ANKH(6), OTULIN(1)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 208 →
Craniometaphyseal dysplasia Schwartz-lelek syndrome
2 genes
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2 of 2 corroborated by 2+ sources
ANKH(6), GJA1(6)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 208 →
Curry-hall syndrome Weyers acrofacial dysostosis
2 genes
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2 of 2 corroborated by 2+ sources
EVC(4), EVC2(4)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 289 →
Cystinosis Nephropathic cystinosis
2 genes
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1 of 2 corroborated by 2+ sources
CTNS(8), TAX1BP3(1)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. —
Deafness with congenital onychodystrophy Digitrenocerebral syndrome
2 genes
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1 of 2 corroborated by 2+ sources
TBC1D24(1), ATP6V1B2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 90 →
Deafness, aminoglycoside-induced Deafness, sensorineural, autosomal-mitochondrial type
2 genes
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1 of 2 corroborated by 2+ sources
ND1(1), COX1(2)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 251 →
Deafness, nonsyndromic sensorineural, mitochondrial Deafness, sensorineural, autosomal-mitochondrial type
2 genes
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1 of 2 corroborated by 2+ sources
ND1(1), COX1(2)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 251 →
Mandibuloacral dysostosis Restrictive dermopathy
2 genes
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2 of 2 corroborated by 2+ sources
LMNA(5), ZMPSTE24(4)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 65 →
Blue cone monochromatism Cone monochromatism
2 genes
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2 of 2 corroborated by 2+ sources
OPN1LW(6), OPN1MW(6)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 214 →
Blue cone monochromatism X-linked cone dysfunction syndrome with myopia
2 genes
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2 of 2 corroborated by 2+ sources
OPN1LW(4), OPN1MW(4)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 214 →
Bone osteosarcoma Osteogenic sarcoma
2 genes
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2 of 2 corroborated by 2+ sources
CHEK2(2), RB1(2)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 3 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.