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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Growth hormone deficiency Hypopituitarism
34 genes
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FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.723 1.000 5.04e-94 4.92e-92 ✓ sig. Cluster 54 →
Hypopituitarism Pituitary short stature
34 genes
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FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.723 1.000 5.04e-94 4.92e-92 ✓ sig. Cluster 54 →
Hypopituitarism Sheehan syndrome
34 genes
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FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.723 1.000 5.04e-94 4.92e-92 ✓ sig. Cluster 54 →
Attention deficit hyperactivity disorder Tourette syndrome
142 genes
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9 of 142 corroborated by 2+ sources
SOX5(2), RERE(1), ATP2A2(1), AKAP6(1), ANK3(2), BANK1(1), BRAF(1), C8orf90(1), CACNB2(1), CAMTA1(1), CSMD1(1), CTNND1(1) +130 more
0.116 0.550 1.69e-94 1.67e-92 ✓ sig. —
Asthma Eczema
165 genes
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28 of 165 corroborated by 2+ sources
RERE(1), CEBPA(1), RTEL1(1), BLTP1(1), CARD11(2), CCR7(1), CSMD1(1), EMSY(1), ERBB3(1), ETS1(1), FADS1(1), FADS2(1) +153 more
0.130 0.452 6.56e-95 6.53e-93 ✓ sig. Cluster 252 →
Hereditary motor and sensory neuropathies Peroneal muscle atrophy
38 genes
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2 of 38 corroborated by 2+ sources
DHTKD1(1), AARS1(1), VCP(1), SLC12A6(1), EGR2(1), KIF1B(1), MME(1), TRPV4(3), DYNC1H1(1), FIG4(1), MFN2(4), NEFL(1) +26 more
0.559 0.974 5.47e-95 5.48e-93 ✓ sig. Cluster 15 →
Kallmann syndrome Panhypopituitarism
35 genes
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22 of 35 corroborated by 2+ sources
FGF8(3), DUSP6(3), HESX1(2), IL17RD(3), PROK2(4), TACR3(2), PROKR2(3), TCF12(2), GH1(1), CHD7(4), FGFR1(4), WDR11(3) +23 more
0.745 0.921 3.60e-95 3.62e-93 ✓ sig. Cluster 54 →
Eczema Psoriasis
143 genes
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21 of 143 corroborated by 2+ sources
RERE(1), IFIH1(3), BLTP1(1), ANKRD55(1), ANO3(1), CSMD1(3), EBF1(1), ELMO1(1), EMSY(1), ERBB3(1), ETS1(1), FAM177A1(1) +131 more
0.150 0.392 3.37e-95 3.40e-93 ✓ sig. —
Growth hormone deficiency Panhypopituitarism
34 genes
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FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.773 1.000 7.30e-96 7.41e-94 ✓ sig. Cluster 54 →
Panhypopituitarism Pituitary short stature
34 genes
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FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.773 1.000 7.30e-96 7.41e-94 ✓ sig. Cluster 54 →
Panhypopituitarism Sheehan syndrome
34 genes
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FGF8(1), DUSP6(1), IL17RD(1), PROK2(1), TACR3(1), PROKR2(1), TCF12(1), GH1(1), CHD7(1), FGFR1(1), WDR11(1), SEMA3E(1) +22 more
0.773 1.000 7.30e-96 7.41e-94 ✓ sig. Cluster 54 →
Global developmental delay Neurodevelopmental disorder
159 genes
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100 of 159 corroborated by 2+ sources
FOXG1(2), UBE3A(1), ANKRD11(2), BPTF(4), NFIX(1), SHANK3(1), PTEN(2), ADNP(2), VCP(2), ATRX(1), ATP1A3(2), ARID1B(2) +147 more
0.138 0.430 3.59e-96 3.70e-94 ✓ sig. Cluster 6 →
Cone-rod dystrophy Retinitis pigmentosa
64 genes
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62 of 64 corroborated by 2+ sources
ABCA4(7), ATF6(4), CNGA3(4), CNGB3(2), PDE6C(2), ACBD5(2), ADAM9(5), IMPG1(4), IMPG2(5), PRPH2(7), AIPL1(5), CACNA1F(3) +52 more
0.174 0.865 3.21e-96 3.32e-94 ✓ sig. Cluster 7 →
Hereditary motor and sensory neuropathies Hypertrophic neuropathy
38 genes
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6 of 38 corroborated by 2+ sources
DHTKD1(1), AARS1(1), VCP(1), SLC12A6(1), EGR2(2), KIF1B(1), MME(1), TRPV4(3), DYNC1H1(1), FIG4(1), MFN2(4), NEFL(1) +26 more
0.567 1.000 1.41e-96 1.46e-94 ✓ sig. Cluster 15 →
Hereditary motor and sensory neuropathies Roussy-levy syndrome
38 genes
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4 of 38 corroborated by 2+ sources
DHTKD1(1), AARS1(1), VCP(1), SLC12A6(1), EGR2(1), KIF1B(1), MME(1), TRPV4(3), DYNC1H1(1), FIG4(1), MFN2(4), NEFL(1) +26 more
0.567 1.000 1.41e-96 1.46e-94 ✓ sig. Cluster 15 →
Dejerine-sottas disease Hereditary motor and sensory neuropathies
38 genes
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6 of 38 corroborated by 2+ sources
DHTKD1(1), AARS1(1), VCP(1), SLC12A6(1), EGR2(3), KIF1B(1), MME(1), TRPV4(3), DYNC1H1(1), FIG4(1), MFN2(4), NEFL(1) +26 more
0.567 1.000 1.41e-96 1.46e-94 ✓ sig. Cluster 15 →
Psoriasis Systemic lupus erythematosus
186 genes
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50 of 186 corroborated by 2+ sources
RERE(1), CAT(2), SH2B3(3), TP63(1), IFIH1(3), BLTP1(1), ADGRL2(1), ANKRD55(1), ATXN2L(1), BANK1(4), BTNL2(1), DAG1(1) +174 more
0.155 0.284 5.29e-97 5.59e-95 ✓ sig. Cluster 28 →
Nephrolithiasis Urolithiasis
51 genes
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4 of 51 corroborated by 2+ sources
KANSL1(1), HIBADH(1), ALPL(1), BCAS3(1), GIPR(1), NBPF3(1), PRKAG2(1), SHROOM3(1), SLC26A1(5), STC1(1), VEGFA(1), WDR72(1) +39 more
0.367 0.739 1.86e-97 1.97e-95 ✓ sig. Cluster 178 →
Adenoid cystic carcinoma Salivary gland neoplasms
43 genes
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JAG1(1), BCL11A(1), FAT1(1), MARCKS(1), MARK2(1), RBFOX2(1), SERPINF1(1), KRT5(1), ST3GAL4(1), GAS6(1), DAPK1(1), ITGB4(1) +31 more
0.422 0.977 9.30e-98 9.93e-96 ✓ sig. —
Autoimmune disease Diabetes mellitus type 1
100 genes
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23 of 100 corroborated by 2+ sources
SH2B3(3), ADGRL2(1), AFF3(1), ANKRD55(1), ATXN2L(1), CAMK4(1), CTSH(3), DAG1(1), ERBB3(1), FAM76B(1), FUT2(1), HLA-DQB3(1) +88 more
0.172 0.495 6.96e-98 7.46e-96 ✓ sig. —
Autism Obsessive-compulsive disorder
152 genes
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35 of 152 corroborated by 2+ sources
SOX5(3), RAI1(3), RERE(2), COMT(2), ATP2A2(1), AKAP6(1), ASAP1(1), BANK1(1), BRAF(1), C8orf90(1), CACNB2(2), COA8(1) +140 more
0.098 0.650 6.15e-98 6.63e-96 ✓ sig. —
Leber congenital amaurosis Retinitis pigmentosa
64 genes
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60 of 64 corroborated by 2+ sources
ABCA4(6), CNGB3(2), PRPH2(7), AIPL1(6), ALMS1(2), ADAMTS18(2), LRAT(6), NBAS(2), NPHP4(2), PDE6B(6), RIMS1(2), TTC8(6) +52 more
0.175 0.889 5.55e-98 6.01e-96 ✓ sig. Cluster 7 →
Bladder calculus Urolithiasis
39 genes
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KANSL1(1), ALPL(1), BCAS3(1), GIPR(1), PRKAG2(1), STC1(1), VEGFA(1), SLC30A10(1), HBB(1), PDILT(1), AP1S3(1), TFAP2B(1) +27 more
0.557 1.000 3.31e-98 3.60e-96 ✓ sig. Cluster 178 →
Genetic steroid-resistant nephrotic syndrome Hereditary steroid-resistant nephrotic syndrome
33 genes
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33 of 33 corroborated by 2+ sources
WT1(2), NUP107(2), COL4A3(2), ACTN4(2), ARHGAP24(2), CD2AP(2), MYO1E(2), NUP160(2), NUP85(2), PAX2(2), PTPRO(2), TRPC6(2) +21 more
0.917 0.971 6.76e-99 7.41e-97 ✓ sig. Cluster 30 →
Growth hormone deficiency Kallmann syndrome
34 genes
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21 of 34 corroborated by 2+ sources
FGF8(3), DUSP6(3), IL17RD(3), PROK2(4), TACR3(2), PROKR2(3), TCF12(2), GH1(1), CHD7(4), FGFR1(4), WDR11(3), SEMA3E(2) +22 more
0.872 1.000 9.56e-100 1.05e-97 ✓ sig. Cluster 54 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.