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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Epiphyseal dysplasia Marshall syndrome
5 genes
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5 of 5 corroborated by 2+ sources
SLC26A2(3), COL2A1(3), COL9A1(5), COL9A2(5), COL9A3(5)
0.200 0.500 4.05e-13 5.07e-12 ✓ sig. Cluster 248 →
Complement component deficiency Macular degeneration
7 genes
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7 of 7 corroborated by 2+ sources
CFI(4), C2(5), C3(7), CFB(5), SERPING1(3), CFH(4), C9(6)
0.090 0.412 4.02e-13 5.03e-12 ✓ sig. —
Myopia Retinitis pigmentosa
22 genes
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20 of 22 corroborated by 2+ sources
COL2A1(2), CACNA1F(2), COL11A1(2), COL18A1(1), PDE6B(6), LRPAP1(5), EFEMP1(2), SIX6(2), P4HA2(5), RDH5(2), NDP(2), VPS13B(2) +10 more
0.047 0.165 3.88e-13 4.86e-12 ✓ sig. —
Sebaceous gland disease Seborrheic dermatitis
6 genes
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HERC2(1), RALY(1), IRF4(1), TYR(1), MC1R(1), SLC45A2(1)
0.130 0.429 3.72e-13 4.67e-12 ✓ sig. Cluster 162 →
Blood coagulation disorder Thrombosis
7 genes
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7 of 7 corroborated by 2+ sources
F2(3), HMOX1(2), SERPINC1(2), F5(3), PROC(2), VKORC1(2), F10(2)
0.111 0.292 3.72e-13 4.67e-12 ✓ sig. Cluster 55 →
Hemorrhage Thrombosis
7 genes
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PLAU(1), F2(1), PLAT(1), BDKRB2(1), VKORC1(1), P2RY12(1), PODXL(1)
0.111 0.292 3.72e-13 4.67e-12 ✓ sig. Cluster 55 →
Myositis Polyarticular juvenile idiopathic arthritis
8 genes
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3 of 8 corroborated by 2+ sources
UBE2L3(1), HLA-DQB1(2), PHTF1(1), PTPN22(3), RSBN1(1), TYK2(1), STAT4(3), PRR5L(1)
0.093 0.250 3.68e-13 4.62e-12 ✓ sig. —
Congenital malformation syndromes associated with short stature Noonan syndrome
5 genes
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5 of 5 corroborated by 2+ sources
BRAF(7), PTPN11(7), LZTR1(7), RIT1(6), SOS2(6)
0.128 0.833 3.62e-13 4.55e-12 ✓ sig. Cluster 42 →
Cone dystrophy Stargardt disease
7 genes
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4 of 7 corroborated by 2+ sources
ABCA4(4), CNGB3(3), PRPH2(2), CRB1(1), KCNV2(3), CERKL(1), RHO(1)
0.117 0.250 3.54e-13 4.45e-12 ✓ sig. Cluster 7 →
Peripheral arterial disease Stroke
24 genes
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9 of 24 corroborated by 2+ sources
WWOX(1), SH2B3(2), DLGAP2(1), HDAC9(2), PTPRG(1), SMARCA4(1), TCF7L2(1), LPL(1), MTHFR(2), ATXN2(1), IL6(2), TWIST1(1) +12 more
0.050 0.136 3.49e-13 4.40e-12 ✓ sig. Cluster 307 →
Brain ischemia Diabetic angiopathies
8 genes
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8 of 8 corroborated by 2+ sources
CASP3(2), MTHFR(2), SOD2(2), TNF(2), PLAT(2), RELA(2), ALB(2), IL1RN(2)
0.088 0.286 3.49e-13 4.40e-12 ✓ sig. —
Brain ischemia Diabetic peripheral angiopathy
8 genes
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8 of 8 corroborated by 2+ sources
CASP3(2), MTHFR(2), SOD2(2), TNF(2), PLAT(2), RELA(2), ALB(2), IL1RN(2)
0.088 0.286 3.49e-13 4.40e-12 ✓ sig. —
Azoospermia Testicular azoospermia
7 genes
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REC8(1), C14orf39(1), MSH5(1), DMC1(1), GCNA(1), MOV10L1(1), TERB1(1)
0.119 0.219 3.41e-13 4.30e-12 ✓ sig. Cluster 31 →
Inflammatory skin disease Sclerosing cholangitis
15 genes
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IFIH1(1), EMSY(1), TNIP1(1), ERAP1(1), FAP(1), GRHL3(1), IFNLR1(1), IL23R(1), KCNH7(1), LCE3A(1), LCE3B(1), NOS2(1) +3 more
0.051 0.197 3.30e-13 4.16e-12 ✓ sig. —
Colobomatous microphthalmia Nanophthalmos
5 genes
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SOX2(1), SIX6(1), OTX2(1), RAX(1), ALDH1A3(1)
0.217 0.417 3.29e-13 4.15e-12 ✓ sig. Cluster 56 →
Amyotrophic lateral sclerosis Schizophrenia
108 genes
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66 of 108 corroborated by 2+ sources
TP53(2), GFAP(2), ALCAM(1), ALDH1A2(2), ANK3(2), APOE(2), CLU(2), CTNND2(2), DAO(5), DISC1(4), DOCK1(1), ERBB4(7) +96 more
0.039 0.325 3.15e-13 3.98e-12 ✓ sig. —
Colonic neoplasms Renal cell carcinoma
18 genes
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1 of 18 corroborated by 2+ sources
HNF1B(1), TP53(1), TET2(2), VEGFA(1), SOD2(1), RELA(1), PTGS2(1), DNMT1(1), ALOX5(1), TNFSF10(1), ERBB2(1), HSPB1(1) +6 more
0.055 0.130 3.11e-13 3.93e-12 ✓ sig. Cluster 5 →
Kidney cancer Uterine fibroid
17 genes
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RTEL1(1), TERT(1), TP53(1), EXO1(1), TTC28(1), POT1(1), CDKN2C(1), STMN3(1), MLLT10(1), ATM(1), C11orf65(1), RBPMS(1) +5 more
0.046 0.210 3.08e-13 3.90e-12 ✓ sig. —
Waardenburg syndrome Waardenburg-shah syndrome
4 genes
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4 of 4 corroborated by 2+ sources
EDNRB(8), MITF(7), EDN3(8), SOX10(8)
0.286 1.000 3.05e-13 3.86e-12 ✓ sig. Cluster 229 →
Constitutional mismatch repair deficiency Muir-torre syndrome
4 genes
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4 of 4 corroborated by 2+ sources
MSH2(7), MSH6(7), PMS2(7), MLH1(8)
0.286 1.000 3.05e-13 3.86e-12 ✓ sig. Cluster 166 →
Constitutional mismatch repair deficiency mismatch repair cancer syndrome 1
4 genes
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4 of 4 corroborated by 2+ sources
MSH2(6), MSH6(7), PMS2(6), MLH1(6)
0.286 1.000 3.05e-13 3.86e-12 ✓ sig. Cluster 166 →
Cystic kidney disease Nephronophthisis
7 genes
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6 of 7 corroborated by 2+ sources
CC2D2A(1), RPGRIP1L(2), TMEM67(4), CEP290(2), SDCCAG8(2), ANKS6(7), INVS(7)
0.117 0.269 2.91e-13 3.69e-12 ✓ sig. Cluster 8 →
Rhinitis Status epilepticus
10 genes
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9 of 10 corroborated by 2+ sources
CAT(2), BDNF(2), HMOX1(2), TNF(2), PTGS2(2), IL1RN(2), ABCB1(1), CCR2(2), CCR3(2), GRIA2(2)
0.079 0.154 2.84e-13 3.60e-12 ✓ sig. —
Seasonal allergic rhinitis Upper respiratory tract disorder
8 genes
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SMAD3(1), IL18R1(1), IL7R(1), NFKB1(1), IL1RL1(1), IL33(1), RANBP6(1), TSLP(1)
0.071 0.400 2.81e-13 3.57e-12 ✓ sig. Cluster 137 →
Hyperuricemic nephropathy Tubulointerstitial kidney disease
4 genes
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3 of 4 corroborated by 2+ sources
HNF1B(1), REN(3), UMOD(3), SEC61A1(5)
0.364 0.800 2.69e-13 3.42e-12 ✓ sig. Cluster 23 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.