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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Esophageal squamous cell carcinoma Mouth neoplasms
11 genes
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1 of 11 corroborated by 2+ sources
TP53(1), ANXA1(1), MGMT(1), TNXB(2), SOD2(1), TPI1(1), PTGS2(1), ADH1B(1), CDKN2A(1), SFN(1), SERPINB3(1)
0.060 0.175 3.94e-12 4.46e-11 ✓ sig. Cluster 5 →
Dental caries Psoriasis
39 genes
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4 of 39 corroborated by 2+ sources
ABT1(1), ADGRL2(1), CTNND2(1), FUT2(1), H4C8(1), HLA-DQA1(2), HLA-DRB5(1), HMGN4(1), MOG(1), OR5V1(1), ROBO1(1), SLC17A1(1) +27 more
0.042 0.169 3.90e-12 4.42e-11 ✓ sig. —
Charcot-marie-tooth disease, x-linked Dejerine-sottas disease
5 genes
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4 of 5 corroborated by 2+ sources
PRPS1(5), AIFM1(5), SBF1(1), GJB1(7), PDK3(6)
0.119 0.625 3.88e-12 4.40e-11 ✓ sig. Cluster 15 →
Charcot-marie-tooth disease, x-linked Hypertrophic neuropathy
5 genes
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4 of 5 corroborated by 2+ sources
PRPS1(5), AIFM1(5), SBF1(1), GJB1(7), PDK3(6)
0.119 0.625 3.88e-12 4.40e-11 ✓ sig. Cluster 15 →
Charcot-marie-tooth disease, x-linked Roussy-levy syndrome
5 genes
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4 of 5 corroborated by 2+ sources
PRPS1(5), AIFM1(5), SBF1(1), GJB1(7), PDK3(6)
0.119 0.625 3.88e-12 4.40e-11 ✓ sig. Cluster 15 →
Arthrogryposis Arthrogryposis multiplex congenita
6 genes
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2 of 6 corroborated by 2+ sources
COL25A1(1), CHRNG(2), ECEL1(1), ERCC6(2), MYH3(1), TPM2(1)
0.077 0.545 3.83e-12 4.35e-11 ✓ sig. —
Anterior segment dysgenesis Rieger syndrome
4 genes
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2 of 4 corroborated by 2+ sources
COL4A1(1), FOXC1(5), PITX2(5), PTCH1(1)
0.167 1.000 3.78e-12 4.30e-11 ✓ sig. —
Large artery stroke Peripheral vascular disease
8 genes
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HDAC9(1), ATXN2(1), TWIST1(1), ABO(1), CELSR2(1), LPA(1), PSRC1(1), EDNRA(1)
0.077 0.242 3.76e-12 4.27e-11 ✓ sig. —
Graft-versus-host disease Myopathic ophthalmopathy
5 genes
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2 of 5 corroborated by 2+ sources
IL10(3), IL2(1), CTLA4(2), PTPN22(1), IL1RN(1)
0.167 0.385 3.61e-12 4.10e-11 ✓ sig. Cluster 147 →
Congestive ophthalmopathy Graft-versus-host disease
5 genes
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2 of 5 corroborated by 2+ sources
IL10(3), IL2(1), CTLA4(2), PTPN22(1), IL1RN(1)
0.167 0.385 3.61e-12 4.10e-11 ✓ sig. Cluster 147 →
Disseminated intravascular coagulation Thrombophilia
5 genes
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4 of 5 corroborated by 2+ sources
F13A1(3), F2(6), PROC(5), TFPI(1), THBD(3)
0.135 0.556 3.50e-12 3.98e-11 ✓ sig. Cluster 55 →
Cerebral hemorrhage Hemorrhage
6 genes
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ITGB3(1), VEGFA(1), PLAU(1), POMC(1), PLAT(1), F7(1)
0.125 0.250 3.38e-12 3.85e-11 ✓ sig. Cluster 55 →
Cerebrooculofacioskeletal syndrome Xeroderma pigmentosum
4 genes
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3 of 4 corroborated by 2+ sources
ERCC1(5), ERCC2(8), BIVM-ERCC5(1), ERCC5(7)
0.267 0.667 3.17e-12 3.61e-11 ✓ sig. Cluster 86 →
Hereditary elliptocytosis Spherocytosis
4 genes
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3 of 4 corroborated by 2+ sources
SPTA1(5), SPTB(4), SLC4A1(3), OR10Z1(1)
0.286 0.571 3.14e-12 3.58e-11 ✓ sig. —
Cryptophthalmos syndrome Goldenhar syndrome
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.286 0.571 3.14e-12 3.58e-11 ✓ sig. Cluster 48 →
Cyclocephaly Goldenhar syndrome
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.286 0.571 3.14e-12 3.58e-11 ✓ sig. Cluster 48 →
Heterotaxy syndrome Visceral heterotaxy
4 genes
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4 of 4 corroborated by 2+ sources
CIROZ(4), LEFTY2(2), DAW1(3), CFAP52(4)
0.174 1.000 3.12e-12 3.57e-11 ✓ sig. Cluster 46 →
Mucopolysaccharidosis Sanfilippo syndrome
4 genes
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4 of 4 corroborated by 2+ sources
NAGLU(7), SGSH(7), GNS(6), HGSNAT(7)
0.174 1.000 3.12e-12 3.57e-11 ✓ sig. Cluster 134 →
Endometrial cancer Ovarian epithelial cancer
15 genes
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HNF1B(1), TERT(1), BCL11A(1), BNC2(1), MECOM(1), SGCZ(1), DLC1(1), RSPO1(1), ABO(1), CCDC170(1), NCAM2(1), BABAM1(1) +3 more
0.055 0.130 3.06e-12 3.50e-11 ✓ sig. —
Dejerine-sottas disease Spinal muscular atrophy
7 genes
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4 of 7 corroborated by 2+ sources
KIF1B(1), TRPV4(2), DYNC1H1(4), HSPB1(1), PLEKHG5(2), GARS1(4), HSPB8(1)
0.101 0.189 3.03e-12 3.47e-11 ✓ sig. Cluster 15 →
Androgenetic alopecia Breast cancer
69 genes
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KANSL1(1), CASZ1(1), RREB1(1), PDE4D(1), ARL17B(1), CCDC91(1), CDKAL1(1), CUX1(1), EBF1(1), ECHDC3(1), FAR2(1), GLI2(1) +57 more
0.049 0.169 2.94e-12 3.37e-11 ✓ sig. Cluster 20 →
Apert syndrome Mobius syndrome
4 genes
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RAB18(1), RAB3GAP1(1), RAB3GAP2(1), TBC1D20(1)
0.235 0.800 2.91e-12 3.34e-11 ✓ sig. Cluster 48 →
Dermatitis Rhinitis
8 genes
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4 of 8 corroborated by 2+ sources
EMSY(1), HLA-DQA1(3), IL4(2), TNF(1), CAPSL(1), CLEC16A(1), NOD2(2), IL13(2)
0.083 0.211 2.86e-12 3.28e-11 ✓ sig. Cluster 16 →
Myeloid leukemia Myeloproliferative disorder
11 genes
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9 of 11 corroborated by 2+ sources
CHEK2(2), RUNX1(5), TERT(3), FOXO1(2), MECOM(2), BCL2(2), JAK2(3), DNMT3A(3), BCR(3), GSKIP(1), ATG2B(1)
0.057 0.208 2.78e-12 3.19e-11 ✓ sig. Cluster 53 →
Aplasia of the vermis Cystic kidney disease
7 genes
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CC2D2A(1), RPGRIP1L(1), TMEM67(1), CEP290(1), TMEM216(1), MKS1(1), TCTN2(1)
0.095 0.269 2.72e-12 3.12e-11 ✓ sig. Cluster 8 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.