Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cerebral arteriovenous malformations Congenital arteriovenous malformation
3 genes
Show details
CACNA1H(1), GLI2(1), ADGRV1(1)
0.103 0.333 2.11e-7 1.40e-6 ✓ sig. —
Ehlers-danlos syndrome Mitral valve prolapse
5 genes
Show details
5 of 5 corroborated by 2+ sources
FBN1(2), COL5A1(8), PLOD1(5), FLNA(2), SLC39A13(5)
0.057 0.114 2.11e-7 1.40e-6 ✓ sig. Cluster 12 →
Cyclocephaly Holoprosencephaly
3 genes
Show details
3 of 3 corroborated by 2+ sources
FGF8(3), GAS1(5), ZIC2(6)
0.088 0.429 2.09e-7 1.39e-6 ✓ sig. —
Potassium deficiency Ventricular dysfunction
4 genes
Show details
4 of 4 corroborated by 2+ sources
INS(2), AGT(2), NPPB(2), ADRB2(2)
0.066 0.222 2.07e-7 1.37e-6 ✓ sig. —
Congenital cystic kidney disease Joubert syndrome
3 genes
Show details
2 of 3 corroborated by 2+ sources
TMEM231(5), KIF14(1), B9D1(5)
0.050 0.750 2.02e-7 1.34e-6 ✓ sig. Cluster 8 →
Generalized epilepsy with febrile seizures plus Lennox-gastaut syndrome
3 genes
Show details
3 of 3 corroborated by 2+ sources
GABRG2(3), SCN1A(8), SCN2A(2)
0.115 0.250 2.01e-7 1.34e-6 ✓ sig. Cluster 47 →
Pancreatic ductal carcinoma Urethral obstruction
4 genes
Show details
RELA(1), HEY1(1), HEY2(1), HES1(1)
0.074 0.154 1.95e-7 1.29e-6 ✓ sig. Cluster 153 →
Genetic predisposition to disease Substance-induced psychosis
4 genes
Show details
ACE(1), ESR1(1), ADORA2A(1), SLC6A3(1)
0.065 0.235 1.92e-7 1.28e-6 ✓ sig. —
Diffuse large b-cell lymphoma Waldenstrom macroglobulinemia
3 genes
Show details
1 of 3 corroborated by 2+ sources
EXOC2(1), IRF4(1), MYD88(2)
0.051 0.750 1.92e-7 1.28e-6 ✓ sig. Cluster 1 →
Intervertebral disc disease Marshall syndrome
3 genes
Show details
3 of 3 corroborated by 2+ sources
COL11A1(6), COL9A2(2), COL9A3(3)
0.111 0.300 1.90e-7 1.26e-6 ✓ sig. —
Marfan syndrome Mitral valve prolapse
5 genes
Show details
4 of 5 corroborated by 2+ sources
FBN1(7), LTBP3(2), COL5A1(2), FLNA(1), LTBP2(2)
0.058 0.116 1.88e-7 1.25e-6 ✓ sig. Cluster 12 →
Intellectual developmental disorder, x-linked X-linked syndromic complex neurodevelopmental disorder
3 genes
Show details
3 of 3 corroborated by 2+ sources
AP1S2(2), TFE3(5), ZFX(5)
0.033 1.000 1.87e-7 1.24e-6 ✓ sig. Cluster 115 →
Adult myoclonic epilepsy Myoclonic epilepsy
3 genes
Show details
3 of 3 corroborated by 2+ sources
RAPGEF2(3), TNRC6A(3), SAMD12(3)
0.100 0.375 1.85e-7 1.23e-6 ✓ sig. —
Familial adult myoclonic epilepsy Myoclonic epilepsy
3 genes
Show details
3 of 3 corroborated by 2+ sources
RAPGEF2(5), TNRC6A(5), SAMD12(5)
0.100 0.375 1.85e-7 1.23e-6 ✓ sig. —
Familial focal epilepsy with variable foci Progressive myoclonic epilepsy
3 genes
Show details
3 of 3 corroborated by 2+ sources
DEPDC5(5), NPRL2(5), NPRL3(5)
0.100 0.375 1.85e-7 1.23e-6 ✓ sig. —
Dravet syndrome Myoclonic epilepsy
3 genes
Show details
3 of 3 corroborated by 2+ sources
GABRA1(2), SCN1A(6), STXBP1(3)
0.100 0.375 1.85e-7 1.23e-6 ✓ sig. Cluster 47 →
Developmental delay Postaxial polydactyly
4 genes
Show details
ND2(1), COX3(1), ND5(1), ND4(1)
0.071 0.190 1.83e-7 1.22e-6 ✓ sig. Cluster 32 →
46,xx ovotesticular disorder of sex development Testicular azoospermia
3 genes
Show details
2 of 3 corroborated by 2+ sources
NR5A1(1), DMRT1(2), MCM9(2)
0.081 0.500 1.79e-7 1.19e-6 ✓ sig. —
Chloracne Methemoglobinemia
3 genes
Show details
3 of 3 corroborated by 2+ sources
HBA1(5), HBA2(3), HBB(4)
0.081 0.500 1.79e-7 1.19e-6 ✓ sig. Cluster 72 →
Benign hereditary chorea Choreatic disease
2 genes
Show details
2 of 2 corroborated by 2+ sources
ADCY5(3), NKX2-1(3)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. —
Emery-dreifuss muscular dystrophy X-linked emery-dreifuss muscular dystrophy
2 genes
Show details
2 of 2 corroborated by 2+ sources
FHL1(4), EMD(5)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. —
Focal cortical dysplasia Polycystic kidney disease with tuberous sclerosis
2 genes
Show details
2 of 2 corroborated by 2+ sources
PKD1(2), TSC2(4)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. Cluster 70 →
Focal cortical dysplasia Polycystic kidneys, severe infantile with tuberous sclerosis
2 genes
Show details
1 of 2 corroborated by 2+ sources
PKD1(1), TSC2(3)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. Cluster 70 →
Iron overload Vitreoretinochoroidopathy
2 genes
Show details
2 of 2 corroborated by 2+ sources
BEST1(5), FTH1(2)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. —
Klippel-trenaunay syndrome Port-wine stain
2 genes
Show details
2 of 2 corroborated by 2+ sources
GNAQ(2), RASA1(2)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. Cluster 40 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.