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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bulbar palsy Gross motor development delay
2 genes
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CACNA1A(1), MECP2(1)
0.100 0.667 3.87e-6 2.04e-5 ✓ sig. Cluster 61 →
Gross motor development delay Multiminicore myopathy
2 genes
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2 of 2 corroborated by 2+ sources
MYH7(2), TTN(2)
0.100 0.667 3.87e-6 2.04e-5 ✓ sig. —
Hematologic disease Hepatic vein thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), JAK2(2)
0.100 0.667 3.87e-6 2.04e-5 ✓ sig. —
Hematologic disease Malnutrition
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), MTR(2)
0.100 0.667 3.87e-6 2.04e-5 ✓ sig. Cluster 121 →
Avascular necrosis of femoral head Spondyloepiphyseal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
COL2A1(8), TRPV4(6)
0.100 0.667 3.87e-6 2.04e-5 ✓ sig. —
Diabetic ketoacidosis Permanent neonatal diabetes mellitus
3 genes
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3 of 3 corroborated by 2+ sources
INS(7), INS-IGF2(2), SLC2A2(3)
0.064 0.214 3.85e-6 2.04e-5 ✓ sig. Cluster 36 →
Myelomonocytic leukemia Promyelocytic leukemia
3 genes
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3 of 3 corroborated by 2+ sources
NRAS(2), PTPN11(4), ASXL1(2)
0.052 0.300 3.80e-6 2.01e-5 ✓ sig. —
Glucose-6-phosphate dehydrogenase deficiency Pleural diseases
2 genes
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2 of 2 corroborated by 2+ sources
IL6(2), IFNG(2)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. —
Endometrial hyperplasia Li-fraumeni syndrome
2 genes
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2 of 2 corroborated by 2+ sources
TP53(7), CDKN2A(2)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. Cluster 3 →
Myelomonocytic leukemia noonan syndrome with multiple lentigines
2 genes
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2 of 2 corroborated by 2+ sources
NRAS(2), PTPN11(4)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. Cluster 42 →
Apert syndrome Martsolf syndrome
2 genes
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2 of 2 corroborated by 2+ sources
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. Cluster 48 →
Beckwith-wiedemann syndrome Sotos syndrome
2 genes
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1 of 2 corroborated by 2+ sources
NSD1(8), PIK3CA(1)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. —
Beckwith-wiedemann syndrome Weaver syndrome
2 genes
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1 of 2 corroborated by 2+ sources
NSD1(4), PIK3CA(1)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. —
Delirium Disruptive impulse-control and conduct disorder
2 genes
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2 of 2 corroborated by 2+ sources
DRD2(2), DRD3(2)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. —
Intervertebral disc disease Intervertebral disc displacement
2 genes
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2 of 2 corroborated by 2+ sources
COL11A1(3), THBS2(3)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. —
Brain edema Visceral myopathy
2 genes
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2 of 2 corroborated by 2+ sources
MYLK(2), MYL9(2)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. —
Alcoholic hepatitis Esotropia
2 genes
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1 of 2 corroborated by 2+ sources
TNF(2), CXCL8(1)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. Cluster 76 →
Bilateral microphthalmos Martsolf syndrome
2 genes
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1 of 2 corroborated by 2+ sources
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. —
Epidermal nevus Nonmedullary thyroid cancer
2 genes
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2 of 2 corroborated by 2+ sources
NRAS(4), HRAS(4)
0.154 0.286 3.72e-6 1.97e-5 ✓ sig. Cluster 18 →
Epidermal nevus Follicular thyroid cancer
2 genes
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2 of 2 corroborated by 2+ sources
NRAS(3), HRAS(3)
0.154 0.286 3.72e-6 1.97e-5 ✓ sig. Cluster 18 →
Gingival diseases Prostatic hyperplasia
2 genes
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2 of 2 corroborated by 2+ sources
PDGFB(2), FGF7(2)
0.154 0.286 3.72e-6 1.97e-5 ✓ sig. Cluster 406 →
Focal cortical dysplasia Hemimegalencephaly
2 genes
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1 of 2 corroborated by 2+ sources
MTOR(4), RHEB(1)
0.154 0.286 3.72e-6 1.97e-5 ✓ sig. —
Hepatic veno occlusive disease Porphyria cutanea tarda
2 genes
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1 of 2 corroborated by 2+ sources
HFE(2), GSTM1(1)
0.154 0.286 3.72e-6 1.97e-5 ✓ sig. Cluster 196 →
Hereditary hemorrhagic telangiectasia Klippel-trenaunay syndrome
2 genes
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RASA1(1), CCNH(1)
0.154 0.286 3.72e-6 1.97e-5 ✓ sig. Cluster 40 →
Appendicitis Hemophilia a
3 genes
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2 of 3 corroborated by 2+ sources
F2(1), IL10(2), IFNG(2)
0.068 0.188 3.67e-6 1.95e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.