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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Celiac disease Immunodeficiency
15 genes
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15 of 15 corroborated by 2+ sources
IRF1(5), IRF4(3), IFNG(5), BACH2(6), CARD9(3), CD28(5), IL2RA(2), FCGR3A(3), FASLG(2), CD247(4), ITPR3(2), TLR8(5) +3 more
0.047 0.108 2.15e-10 2.08e-9 ✓ sig. —
Atrial flutter Wolff-parkinson-white syndrome
8 genes
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8 of 8 corroborated by 2+ sources
TBX5(2), PITX2(2), MYH6(2), CASQ2(2), KCNH2(2), SCN5A(2), TTN(2), GJA5(2)
0.064 0.157 2.18e-10 2.11e-9 ✓ sig. Cluster 4 →
Hemolytic anemia Hereditary hemolytic anemia
5 genes
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5 of 5 corroborated by 2+ sources
GCLC(2), HBB(2), HK1(4), GPI(5), BPGM(3)
0.081 0.455 2.19e-10 2.12e-9 ✓ sig. Cluster 105 →
Bradycardia Chiari-frommel syndrome
4 genes
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4 of 4 corroborated by 2+ sources
PRL(2), DRD2(2), GNRH1(2), LHB(2)
0.133 0.571 2.23e-10 2.15e-9 ✓ sig. —
Dysarthria Spastic paraplegia
7 genes
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3 of 7 corroborated by 2+ sources
PNPLA6(4), ZGRF1(1), SPG7(4), SMC1A(1), SPART(4), BIVM-ERCC5(1), ERCC5(1)
0.051 0.318 2.26e-10 2.19e-9 ✓ sig. —
Esophageal squamous cell carcinoma Transitional cell carcinoma
8 genes
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TP53(1), KMT2C(1), PTGS2(1), CREBBP(1), CDKN1A(1), KDM6A(1), EP300(1), CCND1(1)
0.052 0.242 2.27e-10 2.19e-9 ✓ sig. Cluster 5 →
Amphetamine or sympathomimetic abuse Hyperkinesia
7 genes
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7 of 7 corroborated by 2+ sources
GABBR1(2), ADORA2A(2), DRD1(2), DRD2(2), DRD3(2), FOS(2), SLC6A3(2)
0.067 0.212 2.28e-10 2.20e-9 ✓ sig. Cluster 13 →
Intestinal pseudo-obstruction Megacystis microcolon intestinal hypoperistalsis syndrome
3 genes
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2 of 3 corroborated by 2+ sources
MYH11(5), NDE1(1), ACTG2(6)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 220 →
Oropharyngeal neoplasms Pemphigus vulgaris
3 genes
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3 of 3 corroborated by 2+ sources
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 1 →
Autoimmune polyendocrine syndrome Benign hereditary chorea
3 genes
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0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 1 →
Autoimmune polyendocrine syndrome Pemphigus vulgaris
3 genes
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3 of 3 corroborated by 2+ sources
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 1 →
Benign hereditary chorea Oropharyngeal neoplasms
3 genes
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3 of 3 corroborated by 2+ sources
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 1 →
Digenic hemochromatosis Hereditary hemochromatosis
3 genes
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3 of 3 corroborated by 2+ sources
TFR2(2), HFE(2), HAMP(2)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 135 →
Epidermal nevus Penile neoplasms
3 genes
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3 of 3 corroborated by 2+ sources
KRAS(2), HRAS(3), PIK3CA(3)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 18 →
Epilepsy with auditory features Familial temporal lobe epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
RELN(5), LGI1(7), MICAL1(5)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. —
Familial temporal lobe epilepsy Lateral temporal lobe epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
RELN(4), LGI1(5), GAL(3)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. —
Bladder cancer Epidermal nevus
3 genes
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3 of 3 corroborated by 2+ sources
FGFR3(4), KRAS(2), HRAS(4)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 18 →
Carney complex Carney-stratakis syndrome
3 genes
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3 of 3 corroborated by 2+ sources
SDHB(5), SDHA(2), SDHC(5)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 81 →
Congenital glaucoma Primary congenital glaucoma
3 genes
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3 of 3 corroborated by 2+ sources
CYP1B1(2), TEK(4), LTBP2(3)
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. —
Autoimmune polyendocrine syndrome Uveomeningoencephalitic syndrome
3 genes
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0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 1 →
Oropharyngeal neoplasms Uveomeningoencephalitic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
0.333 0.750 2.30e-10 2.21e-9 ✓ sig. Cluster 1 →
Mouth neoplasms Tongue neoplasms
5 genes
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SOD2(1), PTGS2(1), HSPB1(1), HRAS(1), CRYAB(1)
0.072 0.500 2.42e-10 2.32e-9 ✓ sig. —
Aplasia of the vermis Gastrointestinal stromal tumor
7 genes
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7 of 7 corroborated by 2+ sources
CC2D2A(2), SUFU(2), TMEM231(2), IFT172(2), TMEM17(2), B9D1(2), C2CD3(2)
0.074 0.149 2.46e-10 2.36e-9 ✓ sig. —
Mouth neoplasms Penile neoplasms
4 genes
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TP53(1), KRAS(1), HRAS(1), PIK3CA(1)
0.063 1.000 2.54e-10 2.44e-9 ✓ sig. —
Congenital total cataract Posterior subcapsular cataract
4 genes
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3 of 4 corroborated by 2+ sources
CRYBB2(3), EPHA2(3), MIP(1), LEMD2(3)
0.167 0.364 2.55e-10 2.44e-9 ✓ sig. Cluster 43 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.