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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Osteolysis Uremia
2 genes
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2 of 2 corroborated by 2+ sources
SPP1(2), TNFRSF11B(2)
0.083 0.286 2.70e-5 1.26e-4 ✓ sig. —
Eye disease Ocular sarcoidosis
5 genes
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1 of 5 corroborated by 2+ sources
HLA-DQA1(1), HLA-DQB1(1), KCNH7(1), LRP2(3), STK32C(1)
0.034 0.086 2.70e-5 1.26e-4 ✓ sig. —
Endocrine system disease Hepatic insufficiency
2 genes
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2 of 2 corroborated by 2+ sources
NFE2L2(2), RELA(2)
0.091 0.222 2.75e-5 1.28e-4 ✓ sig. Cluster 153 →
Asperger syndrome Fatigue syndrome
2 genes
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2 of 2 corroborated by 2+ sources
DISC1(2), SLC6A4(2)
0.091 0.222 2.75e-5 1.28e-4 ✓ sig. Cluster 156 →
Bicuspid aortic valve Optic neuropathy
2 genes
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ATP6(1), ATP8(1)
0.091 0.222 2.75e-5 1.28e-4 ✓ sig. —
Cholangitis Intrahepatic cholestasis
2 genes
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2 of 2 corroborated by 2+ sources
EGR1(2), ABCB4(2)
0.091 0.222 2.75e-5 1.28e-4 ✓ sig. —
Metabolic bone disorder Vitamin deficiency disorder
2 genes
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2 of 2 corroborated by 2+ sources
GC(2), CYP2R1(2)
0.091 0.222 2.75e-5 1.28e-4 ✓ sig. —
Hepatic insufficiency Intestinal disease
2 genes
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2 of 2 corroborated by 2+ sources
NOS2(2), MAPK14(2)
0.091 0.222 2.75e-5 1.28e-4 ✓ sig. —
Granulomatosis with polyangiitis Irritant dermatitis
2 genes
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2 of 2 corroborated by 2+ sources
0.091 0.222 2.75e-5 1.28e-4 ✓ sig. —
Paraganglioma Pheochromocytoma
2 genes
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2 of 2 corroborated by 2+ sources
SDHB(3), SDHD(3)
0.087 0.250 2.82e-5 1.31e-4 ✓ sig. Cluster 81 →
Pheochromocytoma Pheochromocytoma/paraganglioma syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SDHB(4), SDHD(4)
0.087 0.250 2.82e-5 1.31e-4 ✓ sig. Cluster 81 →
Rubinstein-taybi syndrome Vacterl association
2 genes
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DLX5(1), SMOC1(1)
0.087 0.250 2.82e-5 1.31e-4 ✓ sig. Cluster 249 →
Gliosarcoma Urologic neoplasms
2 genes
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1 of 2 corroborated by 2+ sources
TP53(2), VEGFA(1)
0.087 0.250 2.82e-5 1.31e-4 ✓ sig. —
Neurofibromatosis-noonan syndrome Strabismus
2 genes
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1 of 2 corroborated by 2+ sources
NF1(6), PTPN11(1)
0.054 0.500 2.83e-5 1.31e-4 ✓ sig. —
Carpal tunnel syndrome Uterine prolapse
3 genes
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1 of 3 corroborated by 2+ sources
FBN2(3), EFEMP1(1), WNT4(1)
0.039 0.200 2.87e-5 1.33e-4 ✓ sig. —
Combined oxidative phosphorylation deficiency Perrault syndrome
3 genes
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3 of 3 corroborated by 2+ sources
PRORP(5), RMND1(5), MRPL49(2)
0.038 0.214 2.90e-5 1.34e-4 ✓ sig. —
Esotropia Hyperbilirubinemia
2 genes
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2 of 2 corroborated by 2+ sources
SOD2(2), TNF(2)
0.091 0.200 2.95e-5 1.37e-4 ✓ sig. —
Gilbert syndrome Hyperbilirubinemia
2 genes
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2 of 2 corroborated by 2+ sources
UGT1A1(4), SLCO1B1(3)
0.091 0.200 2.95e-5 1.37e-4 ✓ sig. Cluster 260 →
Carotid artery stenosis Eye disorder
2 genes
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F2(1), MTHFR(1)
0.091 0.200 2.95e-5 1.37e-4 ✓ sig. —
Keratosis Senile cataract
2 genes
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1 of 2 corroborated by 2+ sources
CAT(2), GSTM1(1)
0.091 0.200 2.95e-5 1.37e-4 ✓ sig. —
Glucose-6-phosphate dehydrogenase deficiency Hepatolenticular degeneration
2 genes
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2 of 2 corroborated by 2+ sources
IL10(2), IL6(2)
0.065 0.400 2.95e-5 1.37e-4 ✓ sig. —
Congenital foot deformity Growth disorder
2 genes
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2 of 2 corroborated by 2+ sources
FGD1(2), PTHLH(2)
0.053 0.500 3.00e-5 1.39e-4 ✓ sig. Cluster 27 →
Demyelinating diseases Paralysis
2 genes
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2 of 2 corroborated by 2+ sources
MOG(2), SIRT1(2)
0.091 0.182 3.05e-5 1.41e-4 ✓ sig. —
Myofibrillar myopathy Posterior subcapsular cataract
2 genes
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2 of 2 corroborated by 2+ sources
CRYAB(3), UNC45B(4)
0.091 0.182 3.05e-5 1.41e-4 ✓ sig. —
Trichothiodystrophy Xeroderma pigmentosum
2 genes
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2 of 2 corroborated by 2+ sources
ERCC2(7), ERCC3(8)
0.091 0.182 3.05e-5 1.41e-4 ✓ sig. Cluster 86 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.