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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Branchiootorenal syndrome Congenital abnormalities
2 genes
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2 of 2 corroborated by 2+ sources
EYA1(5), SIX1(6)
0.105 0.286 1.38e-5 6.66e-5 ✓ sig. Cluster 145 →
Carotid artery stenosis Osteolysis
2 genes
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2 of 2 corroborated by 2+ sources
SPP1(2), TNFRSF11B(2)
0.105 0.286 1.38e-5 6.66e-5 ✓ sig. —
Peeling skin syndrome Rheumatic disease
2 genes
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2 of 2 corroborated by 2+ sources
PSORS1C1(2), CDSN(7)
0.105 0.286 1.38e-5 6.66e-5 ✓ sig. —
Basal ganglia disease Prostatic hyperplasia
2 genes
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2 of 2 corroborated by 2+ sources
PRL(2), PDGFB(2)
0.105 0.286 1.38e-5 6.66e-5 ✓ sig. —
Extravasation of diagnostic and therapeutic materials Pruritus
2 genes
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TAC1(1), HRH1(1)
0.105 0.286 1.38e-5 6.66e-5 ✓ sig. —
Amnesia Neurodegenerative disorder
3 genes
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3 of 3 corroborated by 2+ sources
APP(2), IL6(2), NGF(2)
0.053 0.167 1.39e-5 6.72e-5 ✓ sig. —
Anti-glomerular basement membrane disease Polyneuropathy
2 genes
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HLA-DRB1(1), FCGR3A(1)
0.074 0.500 1.39e-5 6.74e-5 ✓ sig. —
Central nervous system disease Transient ischemic attack
2 genes
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2 of 2 corroborated by 2+ sources
EPO(2), SOD2(2)
0.074 0.500 1.39e-5 6.74e-5 ✓ sig. Cluster 305 →
Pfeiffer syndrome Triple negative breast cancer
2 genes
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2 of 2 corroborated by 2+ sources
MDM4(2), FGFR2(8)
0.056 0.667 1.42e-5 6.85e-5 ✓ sig. —
B-lymphoblastic leukemia/lymphoma Li-fraumeni syndrome
2 genes
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2 of 2 corroborated by 2+ sources
TP53(7), CDKN2A(2)
0.087 0.400 1.44e-5 6.95e-5 ✓ sig. Cluster 3 →
B-lymphoblastic leukemia/lymphoma Urogenital neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), CDKN2A(2)
0.087 0.400 1.44e-5 6.95e-5 ✓ sig. Cluster 3 →
B-lymphoblastic leukemia/lymphoma Malt lymphoma
2 genes
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FOXP1(1), IGH(1)
0.087 0.400 1.44e-5 6.95e-5 ✓ sig. —
Corneal astigmatism Non-small cell lung carcinoma
6 genes
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BNC2(1), HERC2(1), PLCL1(1), CHSY1(1), THSD7B(1), DTNBP1(1)
0.033 0.085 1.47e-5 7.09e-5 ✓ sig. —
Interstitial cystitis Ocular sarcoidosis
4 genes
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0.042 0.100 1.50e-5 7.22e-5 ✓ sig. Cluster 1 →
Bouillaud’s disease Diabetic ketoacidosis
2 genes
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2 of 2 corroborated by 2+ sources
0.054 0.667 1.50e-5 7.25e-5 ✓ sig. —
Geleophysic dysplasia Growth disorder
2 genes
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2 of 2 corroborated by 2+ sources
LTBP3(6), ADAMTSL2(5)
0.054 0.667 1.50e-5 7.25e-5 ✓ sig. —
Large artery stroke Moyamoya disease
5 genes
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1 of 5 corroborated by 2+ sources
HDAC9(1), LRP1(1), TWIST1(1), PHACTR1(2), FLT1(1)
0.037 0.081 1.51e-5 7.29e-5 ✓ sig. —
Curling ulcer Diffuse gastric adenocarcinoma
2 genes
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2 of 2 corroborated by 2+ sources
ABO(2), PSCA(2)
0.095 0.333 1.51e-5 7.30e-5 ✓ sig. Cluster 265 →
Contracture of multiple joints Hydrops fetalis
2 genes
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MYO18A(1), FLVCR2(1)
0.095 0.333 1.51e-5 7.30e-5 ✓ sig. —
Gallbladder neoplasms Penile neoplasms
2 genes
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TP53(1), KRAS(1)
0.071 0.500 1.52e-5 7.30e-5 ✓ sig. —
Urination disorders Ventricular remodeling
2 genes
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2 of 2 corroborated by 2+ sources
NOS1(2), NPPA(2)
0.071 0.500 1.52e-5 7.30e-5 ✓ sig. —
Congenital disorder of glycosylation Desbuquois syndrome
14 genes
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14 of 14 corroborated by 2+ sources
ALG12(4), ALG3(4), ALG9(4), ATP6V0A2(2), FAM20B(3), SLC35C1(3), XYLT1(3), GALNT2(6), CEP290(2), B3GALT6(3), TMEM165(4), COG1(7) +2 more
0.021 0.141 1.53e-5 7.36e-5 ✓ sig. —
Dementia in huntington’s disease Huntington disease
2 genes
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2 of 2 corroborated by 2+ sources
PRNP(6), JPH3(6)
0.032 1.000 1.54e-5 7.43e-5 ✓ sig. —
Huntington disease Interstitial nephritis
2 genes
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2 of 2 corroborated by 2+ sources
FAN1(4), MTMR10(2)
0.032 1.000 1.54e-5 7.43e-5 ✓ sig. —
Non-organic psychosis Schizoaffective disorder
4 genes
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C9orf72(1), PRKCA(1), SAT1(1), CALR(1)
0.040 0.118 1.55e-5 7.45e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.