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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Esophageal disease Thyroid disease
4 genes
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SAMD5(1), SASH1(1), ATXN2(1), CLNK(1)
0.050 0.133 3.21e-6 1.72e-5 ✓ sig. —
Avascular necrosis of bone Hypoxia
3 genes
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3 of 3 corroborated by 2+ sources
NOS3(2), PLAT(2), TFPI(2)
0.067 0.214 3.21e-6 1.72e-5 ✓ sig. Cluster 21 →
Hypoxia Osteonecrosis of medial femoral condyle
3 genes
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3 of 3 corroborated by 2+ sources
NOS3(2), PLAT(2), TFPI(2)
0.067 0.214 3.21e-6 1.72e-5 ✓ sig. Cluster 21 →
Leopard syndrome Leukemia
3 genes
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3 of 3 corroborated by 2+ sources
PTEN(2), PPP1R13L(2), PTPN11(5)
0.058 0.273 3.30e-6 1.77e-5 ✓ sig. —
Leukemia Prostatic intraepithelial neoplasia
3 genes
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PTEN(1), ESR1(1), AR(1)
0.058 0.273 3.30e-6 1.77e-5 ✓ sig. —
Congestive ophthalmopathy T-cell leukemia-lymphoma
3 genes
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3 of 3 corroborated by 2+ sources
IL10(2), IL2(2), CTLA4(2)
0.064 0.231 3.30e-6 1.77e-5 ✓ sig. Cluster 147 →
Myopathic ophthalmopathy T-cell leukemia-lymphoma
3 genes
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3 of 3 corroborated by 2+ sources
IL10(2), IL2(2), CTLA4(2)
0.064 0.231 3.30e-6 1.77e-5 ✓ sig. Cluster 147 →
Neoplasms Triple negative breast cancer
4 genes
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TERT(1), TP53(1), MDM4(1), SLC6A18(1)
0.051 0.118 3.30e-6 1.77e-5 ✓ sig. Cluster 20 →
Dermatomyositis Mitochondrial myopathy
3 genes
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3 of 3 corroborated by 2+ sources
IL1A(2), IL1B(2), TNF(2)
0.068 0.200 3.31e-6 1.77e-5 ✓ sig. —
Gastro-entero-pancreatic neuroendocrine tumor Selective iga deficiency disease
3 genes
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3 of 3 corroborated by 2+ sources
GATA3(2), IKZF3(2), CD86(2)
0.068 0.200 3.31e-6 1.77e-5 ✓ sig. —
Autoimmune polyendocrine syndrome Latent autoimmune diabetes in adults
2 genes
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2 of 2 corroborated by 2+ sources
0.133 0.500 3.34e-6 1.79e-5 ✓ sig. Cluster 1 →
Congenital secretory diarrhea Intestinal obstruction
2 genes
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2 of 2 corroborated by 2+ sources
SLC9A3(4), SLC26A3(3)
0.133 0.500 3.34e-6 1.79e-5 ✓ sig. Cluster 172 →
Atrioventricular septal defect Yorifuji okuno syndrome
2 genes
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2 of 2 corroborated by 2+ sources
GATA4(5), GATA6(6)
0.133 0.500 3.34e-6 1.79e-5 ✓ sig. Cluster 60 →
Combined osteogenesis imperfecta and ehlers-danlos syndrome Heart valve prolapse
2 genes
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2 of 2 corroborated by 2+ sources
COL1A1(4), COL1A2(4)
0.067 1.000 3.42e-6 1.83e-5 ✓ sig. —
Cobblestone lissencephaly Macrogyria
2 genes
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2 of 2 corroborated by 2+ sources
LAMB1(5), TMTC3(2)
0.067 1.000 3.42e-6 1.83e-5 ✓ sig. —
Anhedonia Anorexia
3 genes
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3 of 3 corroborated by 2+ sources
CRH(2), CRHR1(2), CRHR2(2)
0.071 0.167 3.43e-6 1.83e-5 ✓ sig. —
Atrioventricular block Right ventricular cardiomyopathy
2 genes
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1 of 2 corroborated by 2+ sources
LMNA(3), TTN(1)
0.105 0.667 3.44e-6 1.84e-5 ✓ sig. —
Cortical dysplasia with other brain malformations lissencephaly spectrum disorders
2 genes
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2 of 2 corroborated by 2+ sources
TUBG1(4), APC2(5)
0.105 0.667 3.44e-6 1.84e-5 ✓ sig. Cluster 176 →
Craniofacial dysmorphism skeletal anomalies intellectual disability syndrome Micrognathism
2 genes
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1 of 2 corroborated by 2+ sources
0.105 0.667 3.44e-6 1.84e-5 ✓ sig. —
Desbuquois dysplasia Larsen syndrome
2 genes
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2 of 2 corroborated by 2+ sources
XYLT1(5), CANT1(5)
0.105 0.667 3.44e-6 1.84e-5 ✓ sig. —
Brain aneurysm Carotid atherosclerosis
3 genes
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LINGO2(1), CFDP1(1), EDNRA(1)
0.033 0.500 3.44e-6 1.84e-5 ✓ sig. —
Medulloblastoma Sarcoma
4 genes
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2 of 4 corroborated by 2+ sources
APC(2), FLI1(1), BRCA2(4), PRAME(1)
0.051 0.121 3.46e-6 1.85e-5 ✓ sig. —
Eye neoplasms Uveal melanoma
3 genes
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HERC2(1), OCA2(1), IRF4(1)
0.060 0.250 3.52e-6 1.88e-5 ✓ sig. —
Kidney neoplasms Papilloma
3 genes
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SOD2(1), PTGS2(1), CCND1(1)
0.060 0.250 3.52e-6 1.88e-5 ✓ sig. —
Eyelid disease Visual impairment
2 genes
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EFEMP1(1), PNPT1(1)
0.154 0.333 3.54e-6 1.89e-5 ✓ sig. Cluster 146 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.