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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Retinal detachment Stargardt disease
5 genes
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3 of 5 corroborated by 2+ sources
ABCA4(4), COL2A1(3), CRB1(2), EYS(1), RHO(1)
0.071 0.179 1.78e-8 1.39e-7 ✓ sig. —
Dermatomyositis Systemic scleroderma
4 genes
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1 of 4 corroborated by 2+ sources
HLA-DRB5(1), HLA-DPB1(1), STAT4(2), HLA-DPA1(1)
0.093 0.267 1.81e-8 1.42e-7 ✓ sig. Cluster 25 →
Mitochondrial dna depletion syndrome Mitochondrial encephalomyopathy
4 genes
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4 of 4 corroborated by 2+ sources
POLG(5), SCO2(2), TYMP(4), FBXL4(6)
0.095 0.250 1.82e-8 1.43e-7 ✓ sig. —
Congenital total cataract Sutural cataract
3 genes
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3 of 3 corroborated by 2+ sources
CRYBB2(3), GJA8(2), MIP(3)
0.150 0.500 1.84e-8 1.44e-7 ✓ sig. Cluster 43 →
Cyclin-dependent kinase-like 5 deficiency Rett syndrome
3 genes
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2 of 3 corroborated by 2+ sources
CDKL5(4), MECP2(7), RS1(1)
0.150 0.500 1.84e-8 1.44e-7 ✓ sig. Cluster 61 →
Brachydactyly Syndactyly
4 genes
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2 of 4 corroborated by 2+ sources
IHH(6), TULP1(1), HOXD13(7), IQCE(1)
0.100 0.190 1.84e-8 1.44e-7 ✓ sig. Cluster 352 →
Fetal akinesia deformation sequence Myasthenic syndrome
4 genes
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4 of 4 corroborated by 2+ sources
RAPSN(6), MUSK(6), SLC18A3(4), DOK7(5)
0.082 0.333 1.90e-8 1.49e-7 ✓ sig. Cluster 34 →
Amnesia Bradycardia
4 genes
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4 of 4 corroborated by 2+ sources
TRH(2), PDYN(2), POMC(2), TAC1(2)
0.098 0.222 1.92e-8 1.51e-7 ✓ sig. Cluster 13 →
Dravet syndrome Lennox-gastaut syndrome
3 genes
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3 of 3 corroborated by 2+ sources
GABRG2(3), SCN1A(5), SCN2A(2)
0.167 0.375 2.02e-8 1.58e-7 ✓ sig. Cluster 47 →
Bouillaud’s disease Nasopharyngeal neoplasms
3 genes
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3 of 3 corroborated by 2+ sources
0.068 1.000 2.03e-8 1.59e-7 ✓ sig. Cluster 1 →
Partial epilepsy West syndrome
5 genes
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1 of 5 corroborated by 2+ sources
SCN8A(1), CDKL5(1), SCN1A(2), SCN2A(1), SPTAN1(1)
0.071 0.167 2.04e-8 1.59e-7 ✓ sig. —
Iron overload Neurodegeneration with brain iron accumulation
3 genes
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2 of 3 corroborated by 2+ sources
CP(3), BEST1(1), FTH1(6)
0.158 0.429 2.09e-8 1.63e-7 ✓ sig. —
Distal muscular dystrophy Distal myopathy
3 genes
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3 of 3 corroborated by 2+ sources
MATR3(2), MYH7(2), TTN(2)
0.158 0.429 2.09e-8 1.63e-7 ✓ sig. —
Extravasation of diagnostic and therapeutic materials Hyperemia
3 genes
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3 of 3 corroborated by 2+ sources
TAC1(2), KNG1(2), BDKRB2(2)
0.158 0.429 2.09e-8 1.63e-7 ✓ sig. Cluster 250 →
Central nervous system non-hodgkin lymphoma Rosacea
3 genes
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HLA-DQA1(1), HLA-DRB1(1), IRF4(1)
0.158 0.429 2.09e-8 1.63e-7 ✓ sig. Cluster 1 →
Angina pectoris Arteriosclerosis
4 genes
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2 of 4 corroborated by 2+ sources
TLR4(2), MMP1(1), MMP9(2), ITGA2(1)
0.080 0.333 2.11e-8 1.65e-7 ✓ sig. —
Idiopathic steroid-resistant nephrotic syndrome Nephrotic syndrome, idiopathic, steroid-resistant
3 genes
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2 of 3 corroborated by 2+ sources
NPHS2(2), NUP93(1), NUP205(2)
0.100 0.750 2.15e-8 1.68e-7 ✓ sig. —
Cardioembolic stroke Long qt syndrome
9 genes
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8 of 9 corroborated by 2+ sources
RBM20(2), TBX5(3), KCNJ5(8), KLF12(1), SYNE2(2), NKX2-5(2), KCNH2(8), TTN(2), HCN4(2)
0.046 0.089 2.16e-8 1.69e-7 ✓ sig. —
Dystonia Early-onset generalized limb-onset dystonia
3 genes
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3 of 3 corroborated by 2+ sources
EIF2AK2(6), TOR1A(6), SHQ1(4)
0.067 1.000 2.18e-8 1.70e-7 ✓ sig. Cluster 167 →
Eosinophilia Rhinitis
8 genes
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3 of 8 corroborated by 2+ sources
CCL26(1), EMSY(1), HLA-DQA1(2), TLR4(2), SMAD3(1), CLEC16A(1), TLR2(2), WDR36(1)
0.047 0.123 2.18e-8 1.70e-7 ✓ sig. Cluster 16 →
Beta thalassemia Hemoglobin e disease
3 genes
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3 of 3 corroborated by 2+ sources
BCL11A(2), HBS1L(2), HBB(8)
0.125 0.600 2.18e-8 1.70e-7 ✓ sig. —
Partington syndrome X-linked complex neurodevelopmental disorder
4 genes
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4 of 4 corroborated by 2+ sources
ARX(8), AP1S2(3), KDM5C(2), PAK3(2)
0.087 0.286 2.20e-8 1.72e-7 ✓ sig. —
Developmental delay Neuropathy, ataxia, and retinitis pigmentosa
4 genes
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ND2(1), COX3(1), ND5(1), ND4(1)
0.083 0.308 2.22e-8 1.73e-7 ✓ sig. Cluster 32 →
Cholangiocarcinoma Giant cell glioblastoma
4 genes
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3 of 4 corroborated by 2+ sources
TP53(2), EGFR(2), IDH1(2), ROS1(1)
0.083 0.308 2.22e-8 1.73e-7 ✓ sig. —
Astigmatism Hyperopia
4 genes
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1 of 4 corroborated by 2+ sources
ANKRD11(2), SLC9A6(1), MCM7(1), SCLT1(1)
0.048 0.571 2.22e-8 1.73e-7 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.