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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Diabetic ketoacidosis Latent autoimmune diabetes in adults
4 genes
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1 of 4 corroborated by 2+ sources
INS(3), HLA-DQA1(1), HLA-DQB1(1), INS-IGF2(1)
0.091 0.333 1.09e-8 8.74e-8 ✓ sig. —
Childhood absence epilepsy Dravet syndrome
3 genes
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3 of 3 corroborated by 2+ sources
GABRG2(2), GABRA1(2), SCN1B(3)
0.188 0.375 1.10e-8 8.82e-8 ✓ sig. Cluster 47 →
Fuchs endothelial dystrophy Keratoconus
6 genes
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1 of 6 corroborated by 2+ sources
COL8A2(3), RORA(1), PIDD1(1), RPLP2(1), HS3ST3B1(1), PNPLA2(1)
0.047 0.261 1.12e-8 8.94e-8 ✓ sig. —
Edema Venous insufficiency
4 genes
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ABO(1), FTO(1), SLC19A2(1), F5(1)
0.073 0.444 1.13e-8 9.01e-8 ✓ sig. —
Membranous glomerulonephritis Myasthenia gravis
5 genes
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4 of 5 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), CFB(2), HLA-B(2), C6orf15(1)
0.077 0.161 1.13e-8 9.02e-8 ✓ sig. Cluster 1 →
Diabetic polyneuropathy Osteomyelitis
3 genes
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1 of 3 corroborated by 2+ sources
TCF7L2(1), HLA-DQB1(2), FTO(1)
0.188 0.333 1.16e-8 9.25e-8 ✓ sig. —
Mainzer-saldino disease Short-rib thoracic dysplasia
3 genes
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3 of 3 corroborated by 2+ sources
IFT140(3), IFT172(4), WDR19(2)
0.120 0.750 1.16e-8 9.29e-8 ✓ sig. —
Mucositis Neutropenia
4 genes
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4 of 4 corroborated by 2+ sources
IL1B(2), MTHFR(2), CSF2(2), CSF3(2)
0.065 0.500 1.17e-8 9.32e-8 ✓ sig. —
Complete unilateral cleft lip Lacrimoauriculodentodigital syndrome
3 genes
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3 of 3 corroborated by 2+ sources
FGFR3(5), FGF10(5), FGFR2(4)
0.081 1.000 1.17e-8 9.36e-8 ✓ sig. —
inherited retinal dystrophy Stargardt disease
4 genes
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4 of 4 corroborated by 2+ sources
LRAT(2), CRB1(2), SPATA7(2), KCNV2(2)
0.100 0.267 1.18e-8 9.39e-8 ✓ sig. —
Arteriosclerosis Vasculitis
5 genes
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5 of 5 corroborated by 2+ sources
GATA2(2), SERPINA1(2), NOS3(2), NFKBIA(2), SENP1(2)
0.076 0.172 1.18e-8 9.39e-8 ✓ sig. —
Hemolytic uremic syndrome Macular and posterior pole degeneration
4 genes
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4 of 4 corroborated by 2+ sources
CFI(6), C3(6), CD46(7), CFH(6)
0.093 0.308 1.23e-8 9.82e-8 ✓ sig. —
Leukemia Lymphoid leukemia
5 genes
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GRAMD1B(1), IRF4(1), SP140(1), MYNN(1), ACTRT3(1)
0.075 0.179 1.25e-8 9.97e-8 ✓ sig. —
Eye neoplasms Skin hair eye pigmentation variation
3 genes
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3 of 3 corroborated by 2+ sources
HERC2(2), OCA2(2), SLC24A5(2)
0.176 0.429 1.26e-8 1.00e-7 ✓ sig. Cluster 298 →
Latent autoimmune diabetes in adults Uveomeningoencephalitic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DQA1(2), HLA-DQB1(2), PTPN22(2)
0.176 0.429 1.26e-8 1.00e-7 ✓ sig. Cluster 1 →
Congenital aneurysm of ascending aorta Megacystis microcolon intestinal hypoperistalsis syndrome
3 genes
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2 of 3 corroborated by 2+ sources
MYH11(5), NDE1(1), MYLK(6)
0.176 0.429 1.26e-8 1.00e-7 ✓ sig. —
Autoimmune musculoskeletal system disorder Uveomeningoencephalitic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), STAT4(2)
0.176 0.429 1.26e-8 1.00e-7 ✓ sig. Cluster 1 →
Cutaneous lupus erythematosus Interstitial cystitis
4 genes
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0.083 0.364 1.27e-8 1.01e-7 ✓ sig. Cluster 1 →
Cleft lip Lacrimoauriculodentodigital syndrome
3 genes
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3 of 3 corroborated by 2+ sources
FGFR3(6), FGF10(6), FGFR2(4)
0.079 1.000 1.28e-8 1.01e-7 ✓ sig. —
Bullous pemphigoid Lymphoma
5 genes
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2 of 5 corroborated by 2+ sources
0.069 0.217 1.28e-8 1.02e-7 ✓ sig. Cluster 1 →
Focal epilepsy Progressive myoclonic epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
DEPDC5(3), NPRL2(4), NPRL3(4)
0.115 0.750 1.33e-8 1.06e-7 ✓ sig. —
Hereditary atrial fibrillation Sick sinus syndrome
4 genes
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4 of 4 corroborated by 2+ sources
KCNJ5(3), PITX2(2), SCN5A(7), TTN(2)
0.103 0.222 1.37e-8 1.09e-7 ✓ sig. Cluster 4 →
Conduction disorder of the heart Sick sinus syndrome
4 genes
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3 of 4 corroborated by 2+ sources
MYH6(3), SCN5A(6), TTN(2), ANK2(1)
0.103 0.222 1.37e-8 1.09e-7 ✓ sig. Cluster 4 →
Diabetic retinopathy Periodontitis
13 genes
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3 of 13 corroborated by 2+ sources
KCNK1(1), RBFOX1(1), TCF7L2(1), TENM2(1), PPARG(1), IL6(1), GSTM1(1), FTO(1), MMP9(2), ANGPT1(2), CRP(2), CCND2(1) +1 more
0.042 0.082 1.37e-8 1.09e-7 ✓ sig. —
Congenital heart defects Hypoplastic left heart syndrome
5 genes
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2 of 5 corroborated by 2+ sources
TBX1(2), FOXP1(1), MYH6(2), MYH7(1), ETV2(1)
0.060 0.278 1.37e-8 1.09e-7 ✓ sig. Cluster 111 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.