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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hypotrichosis simplex Woolly hair
3 genes
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3 of 3 corroborated by 2+ sources
KRT74(6), LIPH(3), LPAR6(4)
0.188 0.500 7.22e-9 6.01e-8 ✓ sig. —
Oropharyngeal cancer Pemphigus vulgaris
4 genes
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1 of 4 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(1), HLA-DQB1(2), THSD7B(1)
0.063 0.571 7.23e-9 6.01e-8 ✓ sig. —
Graves disease Kawasaki disease
8 genes
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3 of 8 corroborated by 2+ sources
BTNL2(1), VEGFA(1), TNF(1), CD40LG(1), HLA-DQB1(2), CD40(3), LTA(2), TSBP1(1)
0.051 0.125 7.21e-9 6.01e-8 ✓ sig. —
Selective iga deficiency disease Selective immunoglobulin a deficiency
3 genes
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3 of 3 corroborated by 2+ sources
IFIH1(2), CLEC16A(2), AHI1(2)
0.094 1.000 7.39e-9 6.14e-8 ✓ sig. Cluster 360 →
Diabetic cardiomyopathy Hypoglycemia
4 genes
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3 of 4 corroborated by 2+ sources
INS(2), TNF(2), INS-IGF2(1), AGTR2(2)
0.105 0.286 7.41e-9 6.16e-8 ✓ sig. —
Carotid artery disease Hyperinsulinism
6 genes
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5 of 6 corroborated by 2+ sources
AGT(2), HMOX1(2), CCL2(2), LTA(1), UCP2(2), CD163(2)
0.065 0.143 7.45e-9 6.19e-8 ✓ sig. Cluster 36 →
46,xx sex reversal 46,xy gonadal dysgenesis
3 genes
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3 of 3 corroborated by 2+ sources
NR5A1(2), SOX9(2), SRY(2)
0.167 0.600 7.47e-9 6.20e-8 ✓ sig. Cluster 38 →
Cerebral saccular aneurysm Intracranial aneurysm
3 genes
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3 of 3 corroborated by 2+ sources
THSD1(2), ENG(2), ANGPTL6(3)
0.167 0.600 7.47e-9 6.20e-8 ✓ sig. Cluster 334 →
Disruptive impulse-control and conduct disorder Dyskinesia, drug-induced
3 genes
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3 of 3 corroborated by 2+ sources
DRD2(2), DRD3(2), FOSB(2)
0.167 0.600 7.47e-9 6.20e-8 ✓ sig. —
Antiphospholipid syndrome Autoimmune polyendocrine syndrome
3 genes
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0.136 0.750 7.49e-9 6.21e-8 ✓ sig. Cluster 1 →
Antiphospholipid syndrome Oropharyngeal neoplasms
3 genes
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3 of 3 corroborated by 2+ sources
0.136 0.750 7.49e-9 6.21e-8 ✓ sig. Cluster 1 →
Cowden disease Paraganglioma
3 genes
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3 of 3 corroborated by 2+ sources
SDHB(5), SDHD(4), SDHC(5)
0.200 0.375 7.72e-9 6.39e-8 ✓ sig. Cluster 81 →
Cowden disease Pheochromocytoma/paraganglioma syndrome
3 genes
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3 of 3 corroborated by 2+ sources
SDHB(6), SDHD(5), SDHC(5)
0.200 0.375 7.72e-9 6.39e-8 ✓ sig. Cluster 81 →
Giant cell arteritis Graft-versus-host disease
4 genes
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3 of 4 corroborated by 2+ sources
IFNG(2), IL17A(2), PTPN22(2), FCGR3A(1)
0.111 0.222 7.73e-9 6.40e-8 ✓ sig. —
Hereditary hemorrhagic telangiectasia Pulmonary hypertension
4 genes
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4 of 4 corroborated by 2+ sources
SMAD4(3), ENG(7), GDF2(7), ACVRL1(7)
0.062 0.571 7.73e-9 6.40e-8 ✓ sig. —
Eye disease Myopia
10 genes
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10 of 10 corroborated by 2+ sources
ABCA1(2), EFEMP1(2), HLA-DQB1(2), KCNQ5(3), PRSS56(3), LRP2(2), LAMA2(3), GJD2(3), RDH5(3), TYR(2)
0.046 0.106 8.03e-9 6.64e-8 ✓ sig. —
Ochoa syndrome Urofacial syndrome
2 genes
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2 of 2 corroborated by 2+ sources
HPSE2(6), LRIG2(6)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. —
Congenital porencephaly Vascular leukoencephalopathy
2 genes
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2 of 2 corroborated by 2+ sources
COL4A2(2), COL4A1(2)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 198 →
Congenital porencephaly Posttraumatic porencephalic cyst of brain
2 genes
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COL4A2(1), COL4A1(1)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 198 →
Congenital reticular ichthyosiform erythroderma Epidermolytic ichthyosis
2 genes
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2 of 2 corroborated by 2+ sources
KRT1(6), KRT10(6)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 230 →
Craniofacial dysplasia short stature ectodermal anomalies intellectual disability syndrome Developmental delay with short stature and dysmorphic facial features
2 genes
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2 of 2 corroborated by 2+ sources
DPH1(8), DPH2(4)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. —
Deafness enamel hypoplasia nail defects Deafness-enamel hypoplasia-nail defects syndrome
2 genes
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2 of 2 corroborated by 2+ sources
PEX6(3), PEX1(3)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 219 →
Deafness with congenital onychodystrophy Doors syndrome
2 genes
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2 of 2 corroborated by 2+ sources
TBC1D24(4), ATP6V1B2(5)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 90 →
Dejerine-lichtheim phenomenon Postictal aphasia
2 genes
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PLAT(1), L1CAM(1)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 258 →
Dejerine-lichtheim phenomenon Syntactic aphasia
2 genes
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PLAT(1), L1CAM(1)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 258 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.