Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Neuropathy, ataxia, and retinitis pigmentosa Optic neuropathy
4 genes
Show details
1 of 4 corroborated by 2+ sources
ND1(1), ATP6(2), ATP8(1), ND4(1)
0.211 0.444 3.84e-11 3.96e-10 ✓ sig. Cluster 32 →
Epidermolysis bullosa Other epidermolysis bullosa
4 genes
Show details
3 of 4 corroborated by 2+ sources
PLEC(8), LAMB3(1), ITGB4(5), ITGA6(2)
0.167 0.667 3.83e-11 3.96e-10 ✓ sig. —
Genetic predisposition to disease Pulmonary fibrosis
9 genes
Show details
9 of 9 corroborated by 2+ sources
CAT(2), TERT(3), ACE(2), IL1B(2), SOD1(2), EGF(2), OGG1(2), MT2A(2), TGFA(2)
0.061 0.188 3.59e-11 3.72e-10 ✓ sig. —
Gastroesophageal reflux disease Irritable bowel syndrome
18 genes
Show details
CELF4(1), CNTNAP2(1), DCC(1), ERBB4(1), FOXP2(1), H3C12(1), HLA-C(1), MECOM(1), SHISA6(1), SORCS3(1), TCF4(1), SMG6(1) +6 more
0.045 0.134 3.57e-11 3.70e-10 ✓ sig. Cluster 2 →
Atrial septal defect Atrioventricular septal defect
5 genes
Show details
2 of 5 corroborated by 2+ sources
GATA4(6), FOXP1(1), TBX5(1), CHD7(1), GATA6(7)
0.116 0.417 3.53e-11 3.65e-10 ✓ sig. —
Bladder calculus Kidney and ureter calculus
4 genes
Show details
4 of 4 corroborated by 2+ sources
CASR(2), RGS14(2), SLC34A1(2), CYP24A1(2)
0.100 1.000 3.51e-11 3.64e-10 ✓ sig. —
Aortic valve disease Heart valve disease
8 genes
Show details
3 of 8 corroborated by 2+ sources
NOTCH1(4), FADS1(1), FADS2(1), MECOM(1), LPA(1), COL1A1(2), TIMP1(2), CEP85L(1)
0.070 0.195 3.42e-11 3.54e-10 ✓ sig. —
Panhypopituitarism Septo-optic dysplasia
5 genes
Show details
5 of 5 corroborated by 2+ sources
SOX3(6), HESX1(5), PROKR2(3), OTX2(2), FGFR1(3)
0.102 0.500 3.33e-11 3.46e-10 ✓ sig. —
Congenital ocular coloboma Microphthalmia
6 genes
Show details
6 of 6 corroborated by 2+ sources
RARB(7), PAX6(2), RAX(3), RBP4(5), MAB21L2(3), FZD5(4)
0.102 0.231 3.32e-11 3.44e-10 ✓ sig. —
Bethlem myopathy Collagen vi muscular dystrophy
3 genes
Show details
3 of 3 corroborated by 2+ sources
COL6A3(6), COL6A1(6), COL6A2(6)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. Cluster 393 →
Bethlem myopathy collagen 6-related myopathy
3 genes
Show details
3 of 3 corroborated by 2+ sources
COL6A3(7), COL6A1(7), COL6A2(7)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. Cluster 393 →
Cerebellar ataxia, impaired intellectual development, and dysequilibrium Cerebellar ataxia, intellectual disability, and dysequilibrium
3 genes
Show details
3 of 3 corroborated by 2+ sources
WDR81(4), VLDLR(4), ATP8A2(3)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. Cluster 317 →
Cerebellar ataxia, impaired intellectual development, and dysequilibrium Dysequilibrium syndrome
3 genes
Show details
3 of 3 corroborated by 2+ sources
WDR81(3), VLDLR(4), ATP8A2(4)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. Cluster 317 →
collagen 6-related myopathy Collagen vi-related myopathy
3 genes
Show details
3 of 3 corroborated by 2+ sources
COL6A3(2), COL6A1(3), COL6A2(2)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. —
Collagen vi muscular dystrophy Collagen vi-related myopathy
3 genes
Show details
3 of 3 corroborated by 2+ sources
COL6A3(4), COL6A1(5), COL6A2(4)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. —
Collagen vi-related myopathy Digenic alport syndrome
3 genes
Show details
3 of 3 corroborated by 2+ sources
COL4A5(3), COL4A3(3), COL4A4(3)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. Cluster 49 →
Congenital insensitivity to pain Erythromelalgia
3 genes
Show details
1 of 3 corroborated by 2+ sources
SCN10A(1), SCN11A(1), SCN9A(5)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. Cluster 164 →
Methemoglobinemia Unstable hemoglobin disease
3 genes
Show details
3 of 3 corroborated by 2+ sources
HBA1(5), HBA2(3), HBB(7)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. Cluster 72 →
Hemoglobin m disease Methemoglobinemia
3 genes
Show details
3 of 3 corroborated by 2+ sources
HBA1(7), HBA2(3), HBB(7)
0.429 1.000 3.29e-11 3.41e-10 ✓ sig. Cluster 72 →
Congenital iris coloboma Congenital ocular coloboma
4 genes
Show details
PAX6(1), ACTG1(1), FZD5(1), SALL2(1)
0.143 0.800 3.19e-11 3.33e-10 ✓ sig. Cluster 272 →
Cardiac arrest Paroxysmal familial ventricular fibrillation
4 genes
Show details
2 of 4 corroborated by 2+ sources
DSP(1), DPP6(2), RYR2(1), SCN5A(2)
0.143 0.800 3.19e-11 3.33e-10 ✓ sig. Cluster 4 →
Dyskeratosis congenita Telomere syndrome
4 genes
Show details
4 of 4 corroborated by 2+ sources
RTEL1(6), TERT(8), PARN(6), WRAP53(8)
0.143 0.800 3.19e-11 3.33e-10 ✓ sig. Cluster 64 →
Limb girdle muscular dystrophy muscular dystrophy, limb-girdle, autosomal dominant
4 genes
Show details
4 of 4 corroborated by 2+ sources
TNPO3(4), CAPN3(7), DNAJB6(5), HNRNPDL(5)
0.103 1.000 3.15e-11 3.30e-10 ✓ sig. Cluster 14 →
Nephronophthisis Polycystic kidney disease
7 genes
Show details
5 of 7 corroborated by 2+ sources
MKKS(1), CC2D2A(1), NPHP3(6), CEP290(2), IFT140(5), NEK8(8), ANKS6(7)
0.085 0.175 3.13e-11 3.27e-10 ✓ sig. —
Ovarian serous carcinoma Uterine fibroid
26 genes
Show details
RTEL1(1), TERT(1), TP53(1), TNFSF13(1), CTNNA2(1), PIK3C2B(1), TNFSF12-TNFSF13(1), TTC28(1), ESR1(1), PARP1(1), RBMS1(1), KREMEN1(1) +14 more
0.047 0.096 2.99e-11 3.13e-10 ✓ sig. Cluster 20 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.