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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital insensitivity to pain Congenital pain insensitivity
3 genes
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3 of 3 corroborated by 2+ sources
SCN11A(2), SCN9A(2), PRDM12(2)
0.375 0.750 1.31e-10 1.29e-9 ✓ sig. Cluster 164 →
Alport syndrome Collagen vi-related myopathy
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(3), COL4A3(5), COL4A4(5)
0.375 0.750 1.31e-10 1.29e-9 ✓ sig. Cluster 49 →
Alport syndrome, x-linked Collagen vi-related myopathy
3 genes
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1 of 3 corroborated by 2+ sources
COL4A5(3), COL4A3(1), COL4A4(1)
0.375 0.750 1.31e-10 1.29e-9 ✓ sig. Cluster 49 →
Hydrophthalmos Primary congenital glaucoma
3 genes
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1 of 3 corroborated by 2+ sources
CYP1B1(1), TEK(2), LTBP2(1)
0.375 0.750 1.31e-10 1.29e-9 ✓ sig. —
Collagen vi-related myopathy Ullrich congenital muscular dystrophy
3 genes
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3 of 3 corroborated by 2+ sources
COL6A3(7), COL6A1(7), COL6A2(7)
0.375 0.750 1.31e-10 1.29e-9 ✓ sig. —
Axenfeld-rieger syndrome Rieger syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COL4A1(2), FOXC1(6), PITX2(6)
0.375 0.750 1.31e-10 1.29e-9 ✓ sig. Cluster 253 →
Benign infantile epilepsy Benign neonatal epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
KCNQ2(4), SCN2A(3), KCNQ3(3)
0.375 0.750 1.31e-10 1.29e-9 ✓ sig. Cluster 165 →
Idiopathic pulmonary fibrosis Obstructive airway disease
10 genes
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9 of 10 corroborated by 2+ sources
RTEL1(4), TERT(4), TNF(2), DSP(4), PTGS2(1), HIF1A(2), SFTPC(3), FAM13A(4), SFTPA1(2), TOLLIP(2)
0.058 0.122 1.23e-10 1.21e-9 ✓ sig. —
Craniofacial microsomia Goldenhar syndrome
4 genes
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3 of 4 corroborated by 2+ sources
MYT1(1), FOXI3(4), AMIGO2(2), SF3B2(4)
0.182 0.400 1.22e-10 1.21e-9 ✓ sig. Cluster 48 →
Hemolytic anemia Spherocytosis
5 genes
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4 of 5 corroborated by 2+ sources
ANK1(3), SPTA1(3), SPTB(3), SLC4A1(3), PLEKHG3(1)
0.082 0.500 1.20e-10 1.19e-9 ✓ sig. —
Rosacea Seborrheic dermatitis
5 genes
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HERC2(1), IRF1(1), IRF4(1), MC1R(1), SLC45A2(1)
0.106 0.357 1.19e-10 1.18e-9 ✓ sig. —
Developmental and epileptic encephalopathy Generalized epilepsy
12 genes
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11 of 12 corroborated by 2+ sources
CACNA1A(5), CUX2(6), GABRA2(6), RBFOX1(2), SIK1(6), SZT2(7), SCN1A(8), CACNA2D2(2), GLS(4), GABRG1(2), SLC38A3(6), STX1B(1)
0.044 0.185 1.11e-10 1.10e-9 ✓ sig. —
Anhydramnios Polycystic kidney disease
5 genes
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5 of 5 corroborated by 2+ sources
DNAJB11(7), NPHP3(2), PKD1(8), PKD2(8), PKHD1(8)
0.091 0.455 1.08e-10 1.07e-9 ✓ sig. —
Muscular dystrophy muscular dystrophy, limb-girdle, autosomal dominant
4 genes
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4 of 4 corroborated by 2+ sources
TNPO3(2), CAPN3(2), DNAJB6(2), HNRNPDL(2)
0.077 1.000 1.07e-10 1.06e-9 ✓ sig. Cluster 14 →
Kallmann syndrome Pituitary stalk interruption syndrome
6 genes
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4 of 6 corroborated by 2+ sources
HESX1(2), PROKR2(3), CHD7(4), WDR11(3), NSMF(1), KISS1R(1)
0.094 0.194 1.05e-10 1.04e-9 ✓ sig. Cluster 54 →
Genetic predisposition to disease Head and neck neoplasms
7 genes
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2 of 7 corroborated by 2+ sources
IL1B(2), GPX1(1), RAD51(1), ADH1C(2), BAP1(1), XRCC3(1), TGFA(1)
0.079 0.149 1.04e-10 1.03e-9 ✓ sig. —
Joubert syndrome Polydactyly
7 genes
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5 of 7 corroborated by 2+ sources
KIF7(1), CPLANE1(6), CC2D2A(5), SMAD6(1), KIAA0586(6), MKS1(6), OFD1(6)
0.077 0.179 1.04e-10 1.03e-9 ✓ sig. Cluster 8 →
Delirium, dementia, and cognitive disorders Hypotension
8 genes
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8 of 8 corroborated by 2+ sources
INS(2), AGT(2), NKAIN2(2), CRH(2), MAOA(2), DRD2(2), CNR1(2), VIP(2)
0.069 0.143 1.01e-10 9.98e-10 ✓ sig. —
Basal ganglia disease Idiopathic basal ganglia calcification
4 genes
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4 of 4 corroborated by 2+ sources
PDGFRB(5), XPR1(5), PDGFB(5), SLC20A2(5)
0.190 0.364 1.00e-10 9.98e-10 ✓ sig. Cluster 390 →
Dyskinesia, drug-induced Hyperkinesia
5 genes
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5 of 5 corroborated by 2+ sources
DRD1(2), DRD2(2), DRD3(2), CCK(2), TH(2)
0.114 0.333 9.74e-11 9.68e-10 ✓ sig. Cluster 13 →
Atypical hemolytic uremic syndrome Mesangiocapillary glomerulonephritis
3 genes
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3 of 3 corroborated by 2+ sources
CFI(2), CD46(3), CFH(3)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. —
Bare lymphocyte syndrome MHC class I deficiency
3 genes
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3 of 3 corroborated by 2+ sources
TAP2(2), TAP1(3), TAPBP(2)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. —
Benign adult familial myoclonic epilepsy Familial adult myoclonic epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
ADRA2B(2), SAMD12(5), STARD7(5)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. Cluster 357 →
Bouillaud’s disease Pemphigus
3 genes
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3 of 3 corroborated by 2+ sources
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. Cluster 1 →
C1q deficiency Complement pathway abnormality
3 genes
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3 of 3 corroborated by 2+ sources
C1QA(5), C1QB(5), C1QC(4)
0.333 1.000 9.21e-11 9.15e-10 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.