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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Idiopathic generalized epilepsy Myoclonic epilepsy
4 genes
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4 of 4 corroborated by 2+ sources
GABRD(5), GABRA1(4), CACNB4(4), CLCN2(5)
0.121 0.333 2.23e-9 1.94e-8 ✓ sig. Cluster 47 →
Hereditary hemorrhagic telangiectasia Pulmonary arterial hypertension
4 genes
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4 of 4 corroborated by 2+ sources
SMAD4(4), ENG(7), GDF2(8), ACVRL1(7)
0.082 0.571 2.21e-9 1.93e-8 ✓ sig. —
B-cell acute lymphoblastic leukemia Lymphoblastic leukemia
7 genes
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1 of 7 corroborated by 2+ sources
IKZF1(1), PIP4K2A(1), GSDMB(1), ARID5B(1), LHPP(1), FLT3(2), CEBPE(1)
0.063 0.123 2.16e-9 1.88e-8 ✓ sig. Cluster 3 →
Cerebrovascular disorder Heart valve disease
7 genes
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3 of 7 corroborated by 2+ sources
ACE(1), IL1B(2), CDK6(2), CELSR2(1), LPA(1), PSRC1(1), PITX2(2)
0.059 0.171 2.16e-9 1.88e-8 ✓ sig. —
Brain edema Cerebral hemorrhage
4 genes
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PLAU(1), S100B(1), PLAT(1), MMP9(1)
0.111 0.400 2.11e-9 1.85e-8 ✓ sig. —
Nasal polyp Sinusitis
5 genes
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HLA-DQA1(1), HLA-DRB1(1), HLA-B(1), IL33(1), TSLP(1)
0.088 0.227 2.04e-9 1.78e-8 ✓ sig. —
Lymphatic metastasis Mouth neoplasms
6 genes
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ANXA1(1), SOD2(1), MT1A(1), CDKN2A(1), CLDN1(1), SFN(1)
0.068 0.200 2.02e-9 1.77e-8 ✓ sig. Cluster 5 →
Hereditary hemochromatosis Iron overload
3 genes
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3 of 3 corroborated by 2+ sources
TF(3), HAMP(2), SLC40A1(2)
0.250 0.429 2.01e-9 1.76e-8 ✓ sig. —
Benign hereditary chorea Pemphigus vulgaris
3 genes
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3 of 3 corroborated by 2+ sources
0.250 0.429 2.01e-9 1.76e-8 ✓ sig. Cluster 1 →
Carney complex hereditary pheochromocytoma-paraganglioma
3 genes
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3 of 3 corroborated by 2+ sources
SDHB(3), SDHA(3), SDHC(3)
0.250 0.429 2.01e-9 1.76e-8 ✓ sig. Cluster 81 →
Pemphigus vulgaris Uveomeningoencephalitic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
0.250 0.429 2.01e-9 1.76e-8 ✓ sig. Cluster 1 →
Endometriosis Uterine fibroid
28 genes
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5 of 28 corroborated by 2+ sources
WT1(1), ETV6(1), RUNX1(1), CDK2AP1(1), ESR2(3), ETV1(1), MTRFR(1), NAALADL2(1), RSPO3(1), ESR1(2), IGF1(3), RNLS(1) +16 more
0.043 0.092 2.00e-9 1.75e-8 ✓ sig. —
Cancer Peptic ulcer disease
15 genes
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1 of 15 corroborated by 2+ sources
BCL3(1), FOXP1(1), HLA-DQA1(1), HLA-DRA(1), HLA-DRB1(2), JAZF1(1), LINC02210-CRHR1(1), MAML3(1), MECOM(1), NSF(1), TTC33(1), JRK(1) +3 more
0.041 0.124 1.99e-9 1.75e-8 ✓ sig. —
Hypochromic microcytic anemia Iron deficiency anemia
3 genes
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2 of 3 corroborated by 2+ sources
TF(2), TNF(1), SLC11A2(3)
0.231 0.600 1.97e-9 1.73e-8 ✓ sig. Cluster 227 →
Cornelia de lange syndrome Wiedemann-steiner syndrome
3 genes
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3 of 3 corroborated by 2+ sources
KMT2A(6), SMC1A(4), SMC3(6)
0.231 0.600 1.97e-9 1.73e-8 ✓ sig. Cluster 297 →
46,xx sex reversal Swyer syndrome
3 genes
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3 of 3 corroborated by 2+ sources
NR5A1(2), SOX9(2), SRY(3)
0.231 0.600 1.97e-9 1.73e-8 ✓ sig. Cluster 38 →
Autoinflammatory syndrome Hemophagocytic lymphohistiocytosis
4 genes
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4 of 4 corroborated by 2+ sources
PRF1(7), UNC13D(7), STX11(6), STXBP2(7)
0.095 0.500 1.96e-9 1.72e-8 ✓ sig. —
Heimler syndrome Zellweger spectrum disorder
3 genes
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2 of 3 corroborated by 2+ sources
PEX6(5), PEX1(4), PEX26(1)
0.200 0.750 1.88e-9 1.65e-8 ✓ sig. —
Hypercalcemia Idiopathic infantile hypercalcemia
3 genes
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3 of 3 corroborated by 2+ sources
KL(2), SLC34A1(6), CYP24A1(5)
0.200 0.750 1.88e-9 1.65e-8 ✓ sig. Cluster 262 →
Hypercalcemia Kidney and ureter calculus
3 genes
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3 of 3 corroborated by 2+ sources
CASR(2), SLC34A1(2), CYP24A1(2)
0.200 0.750 1.88e-9 1.65e-8 ✓ sig. Cluster 262 →
Hyperhomocysteinemia Neural tube defects, folate-sensitive
3 genes
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3 of 3 corroborated by 2+ sources
MTHFR(3), MTRR(3), MTR(2)
0.200 0.750 1.88e-9 1.65e-8 ✓ sig. Cluster 121 →
Alport syndrome, x-linked Steroid-resistant nephrotic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(4), COL4A3(2), COL4A4(2)
0.200 0.750 1.88e-9 1.65e-8 ✓ sig. Cluster 49 →
Liddle syndrome Pseudohypoparathyroidism
3 genes
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3 of 3 corroborated by 2+ sources
SCNN1A(7), SCNN1B(7), SCNN1G(8)
0.200 0.750 1.88e-9 1.65e-8 ✓ sig. Cluster 95 →
Alport syndrome Steroid-resistant nephrotic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(3), COL4A3(6), COL4A4(6)
0.200 0.750 1.88e-9 1.65e-8 ✓ sig. Cluster 49 →
Antiphospholipid syndrome Bouillaud’s disease
3 genes
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0.143 1.000 1.87e-9 1.65e-8 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.