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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Exanthema Stevens-johnson syndrome
4 genes
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4 of 4 corroborated by 2+ sources
HLA-B(3), VWF(2), C1QA(2), LBP(2)
0.049 0.667 9.07e-9 7.29e-8 ✓ sig. —
Sarcoma Synovial sarcoma
3 genes
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3 of 3 corroborated by 2+ sources
SS18(2), SSX1(2), SSX2(3)
0.088 1.000 8.97e-9 7.22e-8 ✓ sig. Cluster 11 →
Chloracne Hemoglobin m disease
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(4), HBA2(3), HBB(5)
0.088 1.000 8.97e-9 7.22e-8 ✓ sig. Cluster 72 →
Chloracne Unstable hemoglobin disease
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(3), HBA2(3), HBB(5)
0.088 1.000 8.97e-9 7.22e-8 ✓ sig. Cluster 72 →
Atypical hemolytic uremic syndrome Hemolytic uremic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
CFI(6), CD46(6), CFH(6)
0.088 1.000 8.97e-9 7.22e-8 ✓ sig. —
Cancer Ovarian epithelial cancer
14 genes
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HNF1B(1), TERT(1), BNC2(1), HLA-DRB5(1), JAZF1(1), MECOM(1), NSF(1), TTC28(1), ZFHX3(1), MLLT10(1), NEK10(1), CCDC170(1) +2 more
0.039 0.122 8.84e-9 7.12e-8 ✓ sig. Cluster 20 →
Anti-glomerular basement membrane disease Graft-versus-host disease
3 genes
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1 of 3 corroborated by 2+ sources
HLA-DPB1(1), CTLA4(2), FCGR3A(1)
0.130 0.750 8.74e-9 7.04e-8 ✓ sig. —
Epidermolysis bullosa Weber-cockayne syndrome
3 genes
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3 of 3 corroborated by 2+ sources
KRT5(7), ITGB4(5), KRT14(7)
0.130 0.750 8.74e-9 7.04e-8 ✓ sig. —
Beta thalassemia Digenic hemochromatosis
3 genes
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3 of 3 corroborated by 2+ sources
TFR2(3), HFE(2), HAMP(3)
0.130 0.750 8.74e-9 7.04e-8 ✓ sig. Cluster 135 →
Blindness Stargardt disease
4 genes
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3 of 4 corroborated by 2+ sources
ABCA4(4), LCA5(2), RPE65(2), RHO(1)
0.103 0.286 8.64e-9 6.98e-8 ✓ sig. —
Hyperlipoproteinemia Hypertriglyceridemia
5 genes
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5 of 5 corroborated by 2+ sources
APOB(2), LPL(5), PPARA(2), CETP(2), APOA5(6)
0.078 0.179 8.59e-9 6.93e-8 ✓ sig. —
Papilloma Transitional cell carcinoma
4 genes
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PTGS2(1), CDKN1A(1), HRAS(1), CCND1(1)
0.095 0.333 8.55e-9 6.90e-8 ✓ sig. —
B-cell acute lymphoblastic leukemia B-lymphoblastic leukemia/lymphoma
5 genes
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5 of 5 corroborated by 2+ sources
IKZF1(2), PIP4K2A(2), GATA3(2), CDKN2A(2), FLT3(2)
0.067 0.263 8.45e-9 6.83e-8 ✓ sig. Cluster 3 →
Autoinflammatory disease, systemic, x-linked Bloch sulzberger syndrome
2 genes
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1 of 2 corroborated by 2+ sources
G6PD(1), IKBKG(3)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 87 →
Axenfeld anomaly Iridogoniodysgenesis
2 genes
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2 of 2 corroborated by 2+ sources
FOXC1(3), PITX2(3)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 253 →
Cerebellar ataxia and hypogonadotropic hypogonadism Cerebellar ataxia-hypogonadism
2 genes
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2 of 2 corroborated by 2+ sources
PNPLA6(2), RNF216(5)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 91 →
Cerebral small vessel disease Vascular leukoencephalopathy
2 genes
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2 of 2 corroborated by 2+ sources
COL4A2(3), COL4A1(2)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 198 →
Cerebral small vessel disease Congenital porencephaly
2 genes
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1 of 2 corroborated by 2+ sources
COL4A2(2), COL4A1(1)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 198 →
Cerebral small vessel disease Posttraumatic porencephalic cyst of brain
2 genes
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1 of 2 corroborated by 2+ sources
COL4A2(2), COL4A1(1)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 198 →
Cerebrofacioarticular syndrome Van maldergem syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FAT4(6), DCHS1(7)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. —
Cervical dysplasia Uterine disease
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), POU4F1(2)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 204 →
Cholesterol embolism Intracranial embolism and thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
PLAU(2), PLAT(2)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 123 →
Choroidal dystrophy Choroidal sclerosis
2 genes
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2 of 2 corroborated by 2+ sources
PRPH2(5), GUCY2D(4)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 45 →
17p11.2 microduplication syndrome Potocki-lupski syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FLCN(4), RAI1(5)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 347 →
Amegakaryocytic thrombocytopenia Congenital amegakaryocytic thrombocytopenia
2 genes
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2 of 2 corroborated by 2+ sources
MPL(7), THPO(6)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 53 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.