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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cystine urolithiasis Hypotonia-cystinuria syndrome
2 genes
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2 of 2 corroborated by 2+ sources
PREPL(2), SLC3A1(2)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. —
Deafness, aminoglycoside-induced Deafness, nonsyndromic sensorineural, mitochondrial
2 genes
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ND1(1), COX1(1)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 251 →
Amelogenesis imperfecta Other epidermolysis bullosa
3 genes
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2 of 3 corroborated by 2+ sources
COL17A1(2), LAMB3(5), LAMC2(1)
0.103 0.500 7.54e-8 5.41e-7 ✓ sig. —
Hemangiosarcoma Urologic neoplasms
3 genes
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TP53(1), VEGFA(1), CCND1(1)
0.125 0.375 7.48e-8 5.40e-7 ✓ sig. Cluster 3 →
Hemochromatosis Iron deficiency anemia
3 genes
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3 of 3 corroborated by 2+ sources
HFE(6), TNF(2), SLC11A2(2)
0.136 0.300 7.15e-8 5.16e-7 ✓ sig. —
Diabetic cardiomyopathy Vascular system injury
3 genes
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3 of 3 corroborated by 2+ sources
SPP1(2), TNF(2), AGTR2(2)
0.136 0.300 7.15e-8 5.16e-7 ✓ sig. —
Intervertebral disc disease Stickler syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COL11A1(6), COL9A2(7), COL9A3(8)
0.136 0.300 7.15e-8 5.16e-7 ✓ sig. —
Angina pectoris Carotid artery disease
4 genes
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3 of 4 corroborated by 2+ sources
PLAU(2), TLR4(2), MMP1(1), MMP9(2)
0.063 0.333 7.06e-8 5.10e-7 ✓ sig. —
Dyslexia Hyperlipidemia
10 genes
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7 of 10 corroborated by 2+ sources
APOB(3), APOE(3), BCL3(3), PMFBP1(1), CETP(2), CSGALNACT1(1), DNAH11(3), INTS10(1), ANGPTL4(3), KLF14(3)
0.041 0.090 7.05e-8 5.10e-7 ✓ sig. —
Arteriosclerosis Primary graft dysfunction
3 genes
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3 of 3 corroborated by 2+ sources
GATA2(2), VCAM1(2), SENP1(2)
0.070 0.750 7.00e-8 5.06e-7 ✓ sig. —
Anodontia Tooth agenesis
3 genes
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3 of 3 corroborated by 2+ sources
LTBP3(2), IRX5(2), MSX1(6)
0.070 0.750 7.00e-8 5.06e-7 ✓ sig. —
Brachydactyly Congenital cartilage disorder
4 genes
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1 of 4 corroborated by 2+ sources
SLC26A2(1), BMPR1B(7), TRPS1(1), PTH1R(1)
0.083 0.190 6.85e-8 4.95e-7 ✓ sig. —
Cadasil Vascular dementia
4 genes
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2 of 4 corroborated by 2+ sources
TREX1(1), NOTCH3(2), ATRIP(1), HTRA1(2)
0.031 0.667 6.75e-8 4.88e-7 ✓ sig. —
Atrial septal defect Hypoplastic left heart syndrome
4 genes
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3 of 4 corroborated by 2+ sources
FOXP1(1), MYH6(6), TBX20(6), NKX2-5(6)
0.080 0.222 6.69e-8 4.84e-7 ✓ sig. —
Diabetes microvascular complications Transient ischemic attack
3 genes
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3 of 3 corroborated by 2+ sources
EPO(3), SOD2(3), IL1RN(3)
0.107 0.500 6.63e-8 4.80e-7 ✓ sig. Cluster 305 →
Antiphospholipid syndrome Benign hereditary chorea
3 genes
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0.120 0.429 6.54e-8 4.74e-7 ✓ sig. Cluster 1 →
Oral submucous fibrosis Varicose veins
3 genes
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3 of 3 corroborated by 2+ sources
MMP1(2), MMP9(2), TIMP1(2)
0.120 0.429 6.54e-8 4.74e-7 ✓ sig. —
Cryptophthalmos syndrome Fraser syndrome
3 genes
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3 of 3 corroborated by 2+ sources
FRAS1(7), GRIP1(6), FREM2(6)
0.120 0.429 6.54e-8 4.74e-7 ✓ sig. —
Exudative retinopathy Retinopathy of prematurity
3 genes
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2 of 3 corroborated by 2+ sources
PRSS23(1), FZD4(2), NDP(2)
0.120 0.429 6.54e-8 4.74e-7 ✓ sig. Cluster 288 →
Neuronal ceroid lipofuscinosis Visual disorder
4 genes
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4 of 4 corroborated by 2+ sources
CLN3(7), CLN6(7), PPT1(7), CLN5(7)
0.083 0.200 6.37e-8 4.62e-7 ✓ sig. Cluster 51 →
Pontocerebellar hypoplasia Visual disorder
4 genes
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4 of 4 corroborated by 2+ sources
TSEN2(7), TSEN54(7), CLN5(2), TSEN34(6)
0.083 0.200 6.37e-8 4.62e-7 ✓ sig. —
Kidney failure Preeclampsia
12 genes
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9 of 12 corroborated by 2+ sources
CP(2), ACE(2), AGT(2), SERPINE1(2), NOS3(2), HMOX1(2), MTHFR(2), PPARG(2), FGF5(1), PRDM8(1), FTO(1), EDN1(2)
0.036 0.122 6.36e-8 4.62e-7 ✓ sig. Cluster 139 →
Edema Hypercalcemia
4 genes
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4 of 4 corroborated by 2+ sources
TNF(2), IL6(2), PTHLH(2), CALCA(2)
0.068 0.308 6.34e-8 4.60e-7 ✓ sig. —
Congenital nasopharyngeal atresia Male infertility
6 genes
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1 of 6 corroborated by 2+ sources
DNAH5(1), CCDC40(1), DNAH11(1), DNAI1(1), ODAD2(1), DNAAF4(2)
0.044 0.200 6.32e-8 4.59e-7 ✓ sig. —
Cor pulmonale Venous insufficiency
3 genes
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ABO(1), SLC19A2(1), F5(1)
0.136 0.333 6.26e-8 4.55e-7 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.