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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Genetic predisposition to disease Testicular neoplasms
3 genes
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ERCC1(1), ERCC4(1), BAP1(1)
0.057 0.429 9.86e-7 5.80e-6 ✓ sig. —
Membranous glomerulonephritis Small cell lung carcinoma
5 genes
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2 of 5 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), HLA-B(1), C6orf15(1), SFTA2(1)
0.042 0.161 9.71e-7 5.71e-6 ✓ sig. —
Pancreatic ductal carcinoma Uterine neoplasms
4 genes
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NOTCH1(1), VEGFA(1), KRAS(1), HES1(1)
0.061 0.129 9.46e-7 5.57e-6 ✓ sig. —
Autoimmune hepatitis Hyperplasia
4 genes
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4 of 4 corroborated by 2+ sources
LEP(2), TGFB1(2), IL13(2), IL9(2)
0.061 0.129 9.46e-7 5.57e-6 ✓ sig. —
Hemorrhage Platelet disorder
3 genes
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3 of 3 corroborated by 2+ sources
ITGB3(2), FERMT3(2), STXBP2(2)
0.086 0.231 9.42e-7 5.55e-6 ✓ sig. —
Iron metabolism disorder Neurodegeneration with brain iron accumulation
3 genes
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3 of 3 corroborated by 2+ sources
CP(4), FTL(4), FTH1(5)
0.088 0.214 9.12e-7 5.37e-6 ✓ sig. —
Intestinal perforation Optic neuropathy
2 genes
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1 of 2 corroborated by 2+ sources
NOS3(2), IFNA2(1)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. —
Hemoglobin m disease Polycythemia vera
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(4), HBB(5)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 72 →
Polycythemia vera Unstable hemoglobin disease
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(3), HBB(5)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 72 →
progressive myoclonus epilepsy Unverricht-lundborg syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SCARB2(3), PRICKLE1(3)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 329 →
Acute disseminated encephalomyelitis Pulmonary alveolar proteinosis
2 genes
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1 of 2 corroborated by 2+ sources
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 1 →
Bone osteosarcoma Small cell carcinoma
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), RB1(2)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 3 →
Leukocyte disorders Splenic disease
2 genes
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2 of 2 corroborated by 2+ sources
FAS(2), PLG(3)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 155 →
Anencephaly Hydrolethalus syndrome
2 genes
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1 of 2 corroborated by 2+ sources
HYLS1(7), PUS3(1)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. —
Ellis-van creveld syndrome Weyers acrofacial dysostosis
2 genes
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2 of 2 corroborated by 2+ sources
EVC(7), EVC2(7)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 289 →
Congenital afibrinogenemia Thromboembolic pulmonary hypertension
2 genes
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2 of 2 corroborated by 2+ sources
FGA(3), FGG(2)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 149 →
Congenital fibrinogen deficiency Thromboembolic pulmonary hypertension
2 genes
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2 of 2 corroborated by 2+ sources
FGA(4), FGG(3)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 149 →
Congenital hypofibrinogenemia Thromboembolic pulmonary hypertension
2 genes
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2 of 2 corroborated by 2+ sources
FGA(2), FGG(2)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 149 →
Afibrinogenemia Thromboembolic pulmonary hypertension
2 genes
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2 of 2 corroborated by 2+ sources
FGA(2), FGG(2)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 149 →
Venous hypertension Venous insufficiency
2 genes
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SLC19A2(1), F5(1)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 37 →
Cerebral thrombosis Von willebrand disorder
2 genes
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1 of 2 corroborated by 2+ sources
PLAT(1), VWF(8)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 266 →
Clinodactyly Micrognathism
3 genes
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DYNC2H1(1), SATB2(1), RPS6KA3(1)
0.091 0.176 9.03e-7 5.34e-6 ✓ sig. —
Uterine prolapse Visual system disorder
2 genes
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EFEMP1(1), PNPT1(1)
0.125 1.000 8.86e-7 5.24e-6 ✓ sig. Cluster 146 →
Baraitser-winter cerebrofrontofacial syndrome Coloboma
2 genes
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2 of 2 corroborated by 2+ sources
ACTB(6), ACTG1(7)
0.125 1.000 8.86e-7 5.24e-6 ✓ sig. —
Atrophy Neuronal ceroid lipofuscinosis
3 genes
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3 of 3 corroborated by 2+ sources
MAPK3(2), RPS6KB1(2), CLN6(7)
0.077 0.300 8.78e-7 5.20e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.